BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952329
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30100.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 1696 0.0
> AT2G30100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr2:12847828-12849669 FORWARD LENGTH=1661
Length=1661
Score = 1696 bits (918), Expect = 0.0
Identities = 1079/1155 (93%), Gaps = 17/1155 (1%)
Strand=Plus/Plus
Query 50 TTCGTTGACCT-TCTC-ACCGATTTCTCTCCGAAGATTCCGT-CCCCGACTTCATCGAAA 106
|||||||| || |||| | |||||||||||||| |||||| | |||||||||||||||||
Sbjct 24 TTCGTTGA-CTATCTCGA-CGATTTCTCTCCGACGATTCC-TCCCCCGACTTCATCGAAA 80
Query 107 CCACAGCGTAAAACCCAGTTCCCGAATCATCATCTGCAATCTGAAATC-AAACTACTCCG 165
||||||||||||||||| |||||||||||| | |||||||||||| | ||||||||| |
Sbjct 81 CCACAGCGTAAAACCCAATTCCCGAATCAT-A--TGCAATCTGAAA-CTAAACTACTCTG 136
Query 166 CTGGGAAATTTCGTGAGCTCGGAGGATTATCTCGTTCCGTGGAGCTAGACCAATTCATCA 225
|||| |||||||| ||| | | ||| |||| ||||||||||||||||||||||||||||
Sbjct 137 CTGGAAAATTTCGCGAGAT--G-GGACTATCACGTTCCGTGGAGCTAGACCAATTCATCA 193
Query 226 CAAGCGAGGAAGAAGAAGAAGAAGCAGAGGAAATAGGAGAAGGGTTTTTCGAAGCGATTG 285
|||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||
Sbjct 194 CAAGCGAGGAGGAAGAAGGAGAAGCAGAGGAGATAGGAGAAGGATTTTTCGAAGCGATTG 253
Query 286 AGGAATTAGAGAGGATGACTAGAGAACCATCAGATATTCTCGAAGAGATGAATCATCGAT 345
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 254 AGGAACTAGAGAGGATGACTAGAGAACCATCAGATATACTCGAAGAGATGAATCATCGAT 313
Query 346 TATCTTCTCGAGAATTGCAATTGATGCTTGTCTATTTCGCACAAGAAGGTAGAGATTCTT 405
|||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 314 TATCTTCTAGAGAATTGCAATTGATGCTTGTTTACTTCGCACAAGAAGGTAGAGATTCAT 373
Query 406 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAAAATAGAGTTGATGAAGAGATAA 465
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 374 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAGAATAGAGTTGATGAAGAGATAA 433
Query 466 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTCAAGAGGAATGTG 525
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 434 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTGAAGATGAATGTA 493
Query 526 ATGCACACCAAGTGTTTGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 585
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 553
Query 586 TTAGTATGATGGAGAAAGTTATTGCTTTGTATTGTGAGATGGGTAAGAAAGAATCTGCGG 645
||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 554 TTAGTATGATGGACAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 613
Query 646 TTTTGTTTGTGAAGGAGGTTTTAAGGAGGAGAGATGGTTTTGGGTATAGTGTTGTTGGTG 705
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 614 TTTTGTTTGTCAAGGAGGTTTTAAGAAGGAGAGATGGTTTTGGTTATAGTGTTGTTGGTG 673
Query 706 GTGGT--T-CTGAAGGTAGAAAAGGTGGACCAGTTGGGTATCTTGCTTGGAAATTGATGG 762
||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 674 GTGGTGGTTCTGAAGGTAGAAAAGGTGGACCTGTTGGGTATCTTGCTTGGAAATTTATGG 733
Query 763 TTGATGGAGACTATAAGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 822
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TTGATGGAGATTATAGGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 793
Query 823 AGCCAGAAGCTTATAGCTATCTAATTGCGATGACAGCAATTGTGAAAGAGCTGAATAGTC 882
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 794 AACCAGAAGCGTACAGCTATCTTATTGCGATGACAGCTATAGTGAAAGAGCTGAATAGTC 853
Query 883 TTGGGAAGACATTACGCGAGTTGAAACGCTTTACACGGGCTGGTTTTGTTGCTGAGATCG 942
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 854 TTGGAAAGACATTACGCGAGTTGAAACGCTTTGCACGGGCTGGTTTTGTTGCTGAGATTG 913
Query 943 ATGATCATGATAGGGTACTCATTGAGAAGTACCAATCGGAAACATTATCCCGCGGACTGC 1002
||||||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||
Sbjct 914 ATGATCACGATAGGGTACTCATTGAGAAGTATCAATCAGAAACATTATCTCGTGGACTGC 973
Query 1003 AATTAGCCACTTGGGCGGTTGAGGAAGGTCAAGAAAATGATTCCATAATTGGGGTGGTCC 1062
| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 974 AGTTAGCAACTTGGGCGGTTGAGGAAGGCCAAGAAAATGATTCCATTATTGGGGTGGTCC 1033
Query 1063 ATGAGAGGCTCCTCGCAATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAAC 1122
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1034 ATGAGAGGCTACTCGCTATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAGC 1093
Query 1123 TCTGGAAGATGAAACTTGCAGGGAGAGAACCCGAAGCTGACCTCCACAACATCGTTATGG 1182
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 1094 TCTGGAAGATGAAACTTGCAGGGAGAGAACCTGAAGCTGACCTCCACGACATTGTTATGG 1153
Query 1183 CCATCTGCGCTTCAC 1197
| |||||||||||||
Sbjct 1154 CGATCTGCGCTTCAC 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5