BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952332

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51870.3 | Symbols: AGL71 | AGAMOUS-like 71 | chr5:21085462-...   758    0.0  


> AT5G51870.3 | Symbols: AGL71 | AGAMOUS-like 71 | chr5:21085462-21088004 
REVERSE LENGTH=914
Length=914

 Score =  758 bits (410),  Expect = 0.0
 Identities = 470/499 (94%), Gaps = 3/499 (1%)
 Strand=Plus/Plus

Query  24   GATGGAGAAGATTATAGAAAGATATGAAAAGTTTACTAATGCCTTGTATGTGGCAGAGAG  83
            |||||||||||||||||| |||||||  ||||||| ||||||||| ||||||||||||||
Sbjct  264  GATGGAGAAGATTATAGATAGATATGGCAAGTTTAGTAATGCCTTCTATGTGGCAGAGAG  323

Query  84   GCCCCAAATAGAACGATACTTGCAGGAGCTGAAGATGGAAA-TGAATAGAATGGTGAAGA  142
            ||| ||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct  324  GCCTCAAGTAGAACGATACTTGCAGGAGCTGAAGATGGAAATTG-ATAGAATGGTGAAAA  382

Query  143  AGATTGATCTTCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGGATTCGTGTT  202
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  383  AGATTGATCTCCTTGAAGTTCATCACCGTAAGCTGTTGGGGCAAGGTTTGGATTCGTGTT  442

Query  203  CAGTGACAGAACTTCAAGAGATAGACACTCAAATTGAGAAAAGCCTTCGTATTGTCAGGT  262
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  443  CAGTGACAGAACTTCAAGAGATTGACACTCAAATTGAGAAAAGCCTTCGTATTGTCAGGT  502

Query  263  CCAGAAAGGCTGAGTTATATGCAGATCAACTGAAAAAGCTAAAAGAAAAGGAGAGGGAGC  322
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  503  CAAGAAAGGCTGAGTTATATGCAGATCAACTGAAAAAGCTAAAAGAAAAGGAGAGGGAGC  562

Query  323  TCTTGAACGAAAGAAAAAGGCTGCGTGAAGAGCAAATTAGAGAAATGTTGATGCGACCGG  382
            |||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct  563  TCTTGAACGAGAGAAAAAGGCTGCTTGAAGAGCAAAATAGAGAAAGGTTGATGCGACCGG  622

Query  383  TGGTACAACCAACTTTACAAATCTGTGATAAGAGTAAAACTGAAGGTGGTTGCAGTACCA  442
            |||| | | ||||||||||||| ||||||||| |||| ||||||||||||  ||| ||||
Sbjct  623  TGGTGCCAGCAACTTTACAAATATGTGATAAGGGTAATACTGAAGGTGGTCACAGAACCA  682

Query  443  AACATTCATCAGAGGTTGAAACCGACCTATTTATTGGATTGCCCGTGACTCGGCTATAAC  502
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  683  AACATTCATCAGAGGTTGAAACCGACCTATTTATCGGATTGCCCGTGACTCGGCTATAAC  742

Query  503  ATATTTACTTCGGTTCCAT  521
            ||||| |||| ||||||||
Sbjct  743  ATATT-ACTTTGGTTCCAT  760



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24916136912


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5