BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952338
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoi... 2719 0.0
AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | nine-cis-ep... 706 0.0
> AT1G78390.1 | Symbols: NCED9, ATNCED9 | nine-cis-epoxycarotenoid
dioxygenase 9 | chr1:29490895-29492875 REVERSE LENGTH=1981
Length=1981
Score = 2719 bits (1472), Expect = 0.0
Identities = 1724/1847 (93%), Gaps = 11/1847 (1%)
Strand=Plus/Plus
Query 1 CGTTTTATCAAGAATCGACTATGGCTTCTACTACCTTACTTCCTTCTACTTCAACCCAAT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 CGTTTAATCAAGAATCGACTATGGCTTCTACTACCTTACTTCCTTCTACTTCAACCCAAT 197
Query 61 TTCTTGATCGAACTTTCTCAACTTCATCTTCTTCTTCGATACCTAATCTTCAATCTTTAT 120
| || || ||||||||||||||||||||||| ||||||| |||||| ||||||||| |||
Sbjct 198 TCCTCGACCGAACTTTCTCAACTTCATCTTCCTCTTCGAGACCTAAACTTCAATCTCTAT 257
Query 121 CGTTTTCCTCCACACTCT-GCAGCAAGAAACTA--A-TCCCTTGCTCTGTTTCTTCCTCC 176
| |||||||| ||||| | | | |||||||||| | |||| |||| |||||||||||||
Sbjct 258 CTTTTTCCTCAACACT-TAGAAACAAGAAACTAGTAGTCCCCTGCTATGTTTCTTCCTCC 316
Query 177 GTCATCAAAAAATCTTACGTTTCGTCTTCTCTCCCATCCCCGAC-TTACAAACAACCCTC 235
|||| ||||||||||| ||| ||||||||||||| ||| ||||| || ||||| ||| ||
Sbjct 317 GTCAACAAAAAATCTTCCGTCTCGTCTTCTCTCCAATCTCCGACATT-CAAACCACCGTC 375
Query 236 TTGGAAGAAACTATGTAACGATGTCGCCAATTTGATCCCGAAAACGACTAATCAGAGTCC 295
||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||| |||
Sbjct 376 TTGGAAGAAACTATGTAACGATGTCACCAACTTGATCCCCAAAACGACGAATCAGAATCC 435
Query 296 AACATTAAACCTGGTACAGAGAACCGCCGCCACT-GTTTTAGACGCGGTGGAGAACATGA 354
|| |||||||| ||| |||||||||||||| | | ||||||||||||||||| ||| |
Sbjct 436 AAAATTAAACCCGGTGCAGAGAACCGCCGCTA-TGGTTTTAGACGCGGTGGAAAACGCCA 494
Query 355 TGATCTCCCACGAACGCCGCCGTCATCCGCTTCCTAAAACGGCGGATCCCGCCGTCCAAA 414
||||||| ||||| |||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 495 TGATCTCACACGAGCGCCGCCGTCATCCCCATCCTAAAACGGCGGATCCTGCCGTCCAAA 554
Query 415 TAGCCGGAAACTTCTTCCCGGTACCGGAGCAACCAGTCGTGCATAACCTTCCGGTGGCTG 474
||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 555 TAGCCGGGAACTTCTTCCCGGTACCGGAGAAACCTGTCGTGCATAACCTTCCGGTGACTG 614
Query 475 GAACAGTACCAGATTGCATTCAAGGAGTTTACGTCAGAAACGGAGCGAATCCGCTTCACA 534
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 615 GAACAGTACCAGAATGCATTCAAGGAGTTTACGTCAGAAACGGAGCAAATCCACTTCACA 674
Query 535 GACCAATCTCCGGGCACCATTTATTCGACGGAGACGGTATGGTTCACGCTGTTCGGTTTG 594
|||| ||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 675 AACCAGTCTCCGGCCACCATTTGTTCGACGGAGACGGTATGGTACACGCTGTCCGGTTCG 734
Query 595 ATAACGGTTCGGTTAGCTACGCTTGTCGGTTTACCGAAACAAACCGGTTGGTTCAAGAAC 654
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ATAACGGCTCGGTTAGCTACGCTTGTCGGTTTACCGAAACAAACCGGTTGGTTCAAGAAC 794
Query 655 GAGAATTTGGTCGCCCTGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACATTTAGGAA 714
| |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GTGAATGTGGTCGTCCGGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACATTTAGGAA 854
Query 715 TCGCCAAGCTTATGCTCTTCAACACCCGCGGGCTATTCGGGTTAGTCGACCCGACCCAAG 774
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 855 TCGCCAAGCTTATGCTCTTCAATACCCGCGGGCTATTTGGGTTAGTCGACCCGACCGGAG 914
Query 775 GACTCGGTGTCGCTAACGCCGGTTTAGTCTATTTCAATGGTCATCTCTTAGCAATGTCTG 834
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 915 GACTCGGTGTCGCTAACGCCGGTTTAGTTTATTTCAATGGTCATCTCTTAGCCATGTCCG 974
Query 835 AAGACGATTTACCGTACCATGTCAAAGTCACTCAAACCGGAGATTTAGAAACTTCGGGTC 894
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 975 AAGACGATTTACCGTACCATGTCAAAGTTACTCAAACCGGAGATTTAGAAACTTCGGGTC 1034
Query 895 GGTACGATTTCGACGGTCAGTTAAAATCCACAATGATAGCCCACCCGAAGATCGA-CCCG 953
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 1035 GGTACGATTTCGACGGTCAGTTAAAATCAACAATGATAGCCCACCCGAAAATCGATCCCG 1094
Query 954 GAAACCCGAGAGCTATTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACCTAAAATAC 1013
|||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1095 -AAACCCGAGAACTCTTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACTTAAAATAC 1153
Query 1014 TTCAGATTCACATCCGACGGCGAGAAATCACCAGACGTCGAGATTCCGCTTGATGAACCA 1073
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1154 TTCAGATTCACATCCGACGGTGAGAAATCACCAGACGTCGAGATTCCGCTTGATCAACCA 1213
Query 1074 ACGATGATCCACGATTTCGCAATTACTAAGAATTTCGTAGTGATCCCAGACCAACAAGTG 1133
|||||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||
Sbjct 1214 ACGATGATCCACGATTTCGCGATCACTGAGAATTTCGTAGTGATTCCAGACCAACAAGTG 1273
Query 1134 GTTTTCCGATTGCCGGAGATGATCAGAGGTGGTTCTCCGGTGGTTTACGACGAGAAGAAG 1193
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1274 GTATTCCGATTGCCGGAGATGATAAGAGGTGGTTCTCCGGTGGTTTACGACGAGAAGAAG 1333
Query 1194 AAATCAAGATTTGGGATTTTGAATAAATACGCGAAAGAGGCTTCGTCGATTCAATGGATC 1253
||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1334 AAATCAAGATTCGGGATTTTGAATAAAAACGCGAAAGATGCTTCGTCGATTCAATGGATC 1393
Query 1254 GAAGTACCAGATTGTTTCTGTTTTCATCTCTGGAACTCTTGGGAAGAACCAGAAACAGAC 1313
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1394 GAAGTACCAGATTGTTTTTGTTTCCATCTATGGAACTCTTGGGAAGAACCAGAAACAGAC 1453
Query 1314 GAAGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCGATTTTCAACGAACACGAC 1373
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1454 GAGGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCAATTTTCAACGAACACGAC 1513
Query 1374 GAAACGCTTCATTGTGTTTTGTCGGAGATAAGGCTAAACCTGAAAACAGGGGAATCAACA 1433
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1514 GAAACACTTCAGAGTGTTTTGTCGGAGATAAGGCTAAACCTTAAAACAGGGGAATCAACA 1573
Query 1434 CGTAGACCGGTTATTTCCGAACAAGTTAATCTCGAAGCCGGTATGGTAAACCGGAATTTA 1493
|||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1574 CGTAGACCGGTTATCTCGGAACAAGTTAATCTCGAAGCTGGTATGGTCAACCGGAATTTA 1633
Query 1494 TTAGGTaaaaaaaCACGGTTTGCTTATTTGGCTTTAACCGAACCGTGGCCTAAAGTGTCC 1553
||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1634 TTAGGTAGAAAAACCCGGTATGCTTATCTGGCTTTAACCGAACCGTGGCCTAAAGTGTCC 1693
Query 1554 GGTTTCGTTAAAGTGGACTTATCGACCGGAGATATTCAAAAGTATATATATGGAGATGGG 1613
||||||| |||||||||||||||||||||||| |||| ||||||||| || ||||| |||
Sbjct 1694 GGTTTCGCTAAAGTGGACTTATCGACCGGAGAGATTCGAAAGTATATTTACGGAGAGGGG 1753
Query 1614 AAATACGGAGGAGAGCCTCTGTTTCTGCCTTCCGGTGACGGTGAAGAAGACGGTGGTTAC 1673
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1754 AAATACGGAGGAGAGCCTCTGTTTCTACCTTCCGGTGACGGAGAAGAAGACGGAGGTTAC 1813
Query 1674 ATTATGGTGTTCGTTCACGACGAGGAGAAGGTGAAATCGGAACTCCAAATCATAAACGCC 1733
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1814 ATAATGGTGTTCGTTCACGACGAGGAGAAGGTGAAATCGGAACTCCAACTCATAAACGCC 1873
Query 1734 GTTAATATGAAGCTTGAAGCTACCGTTACGCTTCCGTCGAGAGTGCCTTATGGTTTCCAC 1793
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1874 GTTAATATGAAGCTTGAAGCTACCGTAACGCTTCCGTCGAGAGTGCCTTACGGTTTCCAC 1933
Query 1794 GGAACGTTCATCAGTAAGGAAGATTTATCGAAGCAAGCTTTGTGTTA 1840
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 GGAACGTTCATCAGTAAGGAAGATTTATCGAAGCAAGCTTTGTGTTA 1980
> AT3G14440.1 | Symbols: NCED3, ATNCED3, STO1, SIS7 | nine-cis-epoxycarotenoid
dioxygenase 3 | chr3:4831288-4833599 REVERSE
LENGTH=2312
Length=2312
Score = 706 bits (382), Expect = 0.0
Identities = 1133/1482 (76%), Gaps = 105/1482 (7%)
Strand=Plus/Plus
Query 381 CCGCTTCCTAAAACGGCGGATCC-CGCCGTCCAAATAGCCGGAAACTTCTT-C-CCGGT- 436
||||||||||||||||| ||||| | || || || |||||||| || || | |||||
Sbjct 456 CCGCTTCCTAAAACGGCTGATCCTAG-TGTTCAGATCGCCGGAAA-TT-TTGCTCCGGTG 512
Query 437 ACCGGAGCAACCAGT-CGTGCATAACCTTCCGGTGGCT-GGAACAGTACCAGATTGCATT 494
| || || || || || || ||| |||||||||| | |||| | | || |||| || |
Sbjct 513 A-ATGAACAGCCCGTCCG-GCGTAATCTTCCGGTGG-TCGGAAAACTTCCCGATTCCA-T 568
Query 495 C-AAGGAGTTTACGT-CAGAAACGGAGCGAATCCGCTTCACAGA-CCAATCTCCGGGCAC 551
| ||||||| || || | | |||||||| || || |||||| || || | | || |||
Sbjct 569 CAAAGGAGTGTATGTGC-GCAACGGAGCTAACCCACTTCAC-GAGCCGGTGACAGGTCAC 626
Query 552 CATTTATTCGACGGAGACGGTATGGTTCACGCTGTTC-GGTTTGATA-ACGGTTCGGTTA 609
|| || |||||||||||||||||||||||||| | || || || | ||||||| | ||
Sbjct 627 CACTTCTTCGACGGAGACGGTATGGTTCACGCCG-TCAAATTCGA-ACACGGTTCAGCTA 684
Query 610 GCTACGCTTGTCGGTTTAC-CGAAACAAACCGGTTGGTTCAAGAACGAGAATTTGGTCGC 668
|||||||||| |||||||| | | || |||||||| ||||| ||||| |||| |||||
Sbjct 685 GCTACGCTTGCCGGTTTACTC-AGACTAACCGGTTTGTTCAGGAACGTCAATTGGGTCGA 743
Query 669 CCTGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACATTTAGGAATCG-CCAAGCTTAT 727
|| |||||||||||||| || || ||||||||||| || || || | || | || ||
Sbjct 744 CCGGTTTTCCCCAAAGCCATCGGTGAGCTTCACGGCCACACCGGTATTGCCCGA-CTCAT 802
Query 728 GCTCTTCAACACCCGCG-GGCTATTCGGGT-TAGTCGACCCGACCCAAGG-ACTCGGTGT 784
||| ||| || || | | || | | ||| ||||||||||| | || || || ||||||
Sbjct 803 GCTATTCTACGCCAGAGCTGC-A-GCCGGTATAGTCGACCCGGCACACGGAAC-CGGTGT 859
Query 785 CGCTAACGCCGGTTTAGTCTATTTCAATGGTC-ATCTCTTAGCAATGTCTGAAGACGATT 843
|||||||||||||| |||||||||||||| | | | || || ||||| || || ||||
Sbjct 860 AGCTAACGCCGGTTTGGTCTATTTCAATGGCCGGT-TATTGGCTATGTCGGAGGATGATT 918
Query 844 TACCGTACCATG-TCAAAGTCACT-CAAACCGGAGATTTAGAAA-C-TTCGGGTCGGTAC 899
|||| ||||| | ||| | ||||| | || ||||||||| ||| | || ||||||| |
Sbjct 919 TACCTTACCAAGTTCAGA-TCACTCCCAA-TGGAGATTTAAAAACCGTT--GGTCGGTTC 974
Query 900 GATTTCGACGGTCAGTTAAAATCCACAATGATAGCCCACCCG-AAGATCGACCCGGAAAC 958
||||| || || || ||| ||||||||||||| ||||||||| ||| ||||||||||| |
Sbjct 975 GATTTTGATGGACAATTAGAATCCACAATGATTGCCCACCCGAAAG-TCGACCCGGAATC 1033
Query 959 CCGAGAGCTATTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACCTAAAATACTTCAG 1018
| | || || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1034 CGGTGAACTCTTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACCTAAAATACTTCCG 1093
Query 1019 ATTCACATCCG-ACGGCGAG-AAATCACCAGACGTCGAGATTCCGCTTGATGAACCAACG 1076
|||| || ||| |||| | |||||||| ||||||||||||| ||||||| | ||||||
Sbjct 1094 ATTCTCA-CCGGACGGA-ACTAAATCACCGGACGTCGAGATTCAGCTTGATCAGCCAACG 1151
Query 1077 ATGATCCACGATTTCGCAATTACTA-AGAATTTCGTAGT-GATCCCAGACCAACAAGTGG 1134
||||| ||||||||||| ||||| | |||| ||||| || | | || ||||| ||||| |
Sbjct 1152 ATGATGCACGATTTCGCGATTAC-AGAGAACTTCGTCGTCG-TACCTGACCAGCAAGTCG 1209
Query 1135 TTTTCC-GATTGCCGGAGATGATCAGAGGTGGTTCTCCGGTGGTTTACGACGAGAAGAAG 1193
||||| | | ||||||||||||| | ||||| |||||||||||||||||| |||| |||
Sbjct 1210 TTTTCAAGCT-GCCGGAGATGATCCGCGGTGGGTCTCCGGTGGTTTACGACAAGAACAAG 1268
Query 1194 AAATCAAGATTTGGGATTTT-GAATAAATACGC-GAAAGAGGCTTCGT-CGATTCAA-TG 1249
||||||| |||||||| || |||||||| ||| || | ||| | ||| || ||
Sbjct 1269 GTCGCAAGATTCGGGATTTTAGAC-AAATACGCCGAA-GATTCATCGAAC-ATT-AAGTG 1324
Query 1250 GATCGAAG-TACCAGATTGTTTCTGTTTTCATCTCTGGAACTCTTGGGAAGAACCAGAAA 1308
||| || | | |||||||| ||||| || |||||||||||| |||||||||| |||||||
Sbjct 1325 GATTGATGCT-CCAGATTGCTTCTGCTTCCATCTCTGGAACGCTTGGGAAGAGCCAGAAA 1383
Query 1309 CAGACGAAGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCGATTTTCAACGAA- 1367
|||| ||||| |||||||| || || || ||||| ||||| || || |||||||||||
Sbjct 1384 CAGATGAAGTCGTCGTGATAGGGTCCTGTATGACTCCACCAGACTCAATTTTCAACGAGT 1443
Query 1368 CACGACGA-AACGCTTCATT-GTGTTTTGTCGGAGATAAGGCTAAACCTGAAAACAGGGG 1425
| ||||| || || || |||| |||| || || | || || || ||||| || |
Sbjct 1444 CT-GACGAGAAT-CT-CAAGAGTGTCCTGTCTGAAATCCGCCTGAATCTCAAAACCGGTG 1500
Query 1426 AATCAACACGTAGACCGGTTATTTCC---GAA---CAA---GTTAATCTCGAAGCCGGTA 1476
||||||| || | ||| | || ||| ||| ||| || || |||||||| || |
Sbjct 1501 AATCAACTCGCCGTCCGATCATCTCCAACGAAGATCAACAAGTCAACCTCGAAGCAGGGA 1560
Query 1477 TGGTAAACCGGAATTTATTAGGTaaaaaaaCACGGTTT-GCTTATTTGGCTTTAACCGAA 1535
|||| ||| | || | | || ||||| | || ||||| ||||||||| ||||
Sbjct 1561 TGGTCAACAGAAACATGCTCGGCCGTAAAAC-CAAATTCGCTTACTTGGCTTTAGCCGAG 1619
Query 1536 CCGTGGCCTAAAGTGTCCGGTTTCGTTAAAGTGGA-CTTATCGACCGGAGATA-TTCA-A 1592
|||||||||||||| || || |||| |||||| || || | | || ||||| | || | |
Sbjct 1620 CCGTGGCCTAAAGTCTCAGGATTCGCTAAAGTTGATCTCA-CTACTGGAGA-AGTTAAGA 1677
Query 1593 AAGTATATATATGGAGATGGGAAATACGGAGGAGAGCCTCTGTTTCTGCCTTCCGGTGAC 1652
|| || | || || ||| ||||||||||||||||||||||| || |||| ||
Sbjct 1678 AAC-ATCTTTACGGCGATAACCGTTACGGAGGAGAGCCTCTGTTTCT-CC--CCGGAGAA 1733
Query 1653 GGTG-A-AG-AAGACGGTGGTTACATTATGGTGTT-CGTTCACGACGAGGAGA-AGGTGA 1707
|| | | || |||||| || ||||| | |||| ||||||||||||| ||| | | ||
Sbjct 1734 GGAGGAGAGGAAGACGAAGGATACATCCTC-TGTTTCGTTCACGACGAGAAGACATG-GA 1791
Query 1708 AATCGGAACTCCAAATCA-TAAACGCCGTTAA-T-ATGAAGCTTGAAGCTACCGTTACGC 1764
||||||| | || || | | |||||||||| | | || | ||||||| || |||| |
Sbjct 1792 AATCGGAGTTACAGAT-AGTTAACGCCGTTAGCTTA-GAGG-TTGAAGCAACGGTTAAAC 1848
Query 1765 TTCCGTCGAGAGTGCCTTATGG-TTTCCACGGAACGTTCATC 1805
||||||| || || || || || |||| |||| || ||||||
Sbjct 1849 TTCCGTCAAGGGTTCCGTACGGATTTC-ACGGTACATTCATC 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92168200620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5