BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952354

Length=1738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06520.1 | Symbols:  | SWAP (Suppressor-of-White-APricot)/su...   111    2e-23


> AT5G06520.1 | Symbols:  | SWAP (Suppressor-of-White-APricot)/surp 
domain-containing protein | chr5:1987250-1989372 REVERSE 
LENGTH=2040
Length=2040

 Score =  111 bits (60),  Expect = 2e-23
 Identities = 77/85 (91%), Gaps = 1/85 (1%)
 Strand=Plus/Plus

Query  1450  TCCCTGGAAAGGGGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCGCAGTTTG  1509
             |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct  1433  TCCCTGAAAAGGAGATCACACTCAAGGAGCTTGGTATTATTAAGCTCACAGCACAGTTTA  1492

Query  1510  TGGTGCGGTATGGGTATGATTTTTG  1534
             ||| |||||| ||| |||| |||||
Sbjct  1493  TGGCGCGGTACGGG-ATGAATTTTG  1516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 85943333040


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5