BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952367
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51570.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 1511 0.0
> AT5G51570.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:20949404-20951497 FORWARD
LENGTH=1249
Length=1249
Score = 1511 bits (818), Expect = 0.0
Identities = 886/920 (96%), Gaps = 0/920 (0%)
Strand=Plus/Plus
Query 2 TTGAGAGTACTGCGTAGAAATGGGGAACACGTTTTGTATCCTCGGTGGTTGTATTGATCA 61
|||||||| ||||||| ||||||| || |||| ||||||| | || ||||||||||| ||
Sbjct 89 TTGAGAGTGCTGCGTAAAAATGGGTAATACGTATTGTATCTTAGGAGGTTGTATTGAACA 148
Query 62 AGCTAGCGTTGGTGTGGTCGAACGTTGGGGCCGGTTCGAGCATATAGCTGAACCAGGATG 121
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 149 AGCTAGCGTTGGTGTGGTCGAACGTTGGGGTCGATTCGAGCATATAGCTGAACCGGGATG 208
Query 122 TCAtttttttAACCCTCTCGCTGGTCAATGGCTCGCCGGAGTTCTCTCCACTAGGATCAA 181
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 209 TCATTTCTTCAACCCTCTCGCCGGTCAATGGCTCGCCGGAGTTCTCTCCACTAGGATCAA 268
Query 182 CTCTCTTGATGTCAAAATTGAAACCAAAACTAAGGATAATGTGTTTGTGCAGCTGGTTTG 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 ATCTCTTGATGTCAAAATTGAAACCAAAACTAAGGATAATGTGTTTGTGCAGCTGGTTTG 328
Query 242 TTCGATTCAGTATCGTGTAGTGAAAGCTAGTGCTGATGATGCGTTTTATGAGCTTCAAAA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TTCGATTCAGTATCGTGTAGTGAAAGCTAGTGCTGATGATGCGTTTTATGAGCTTCAAAA 388
Query 302 CCCTAAAGAGCAGATCCAAGCTTATGTCTTTGATGTGGTTAGGGCTTTGGTTCCAATGAT 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 389 CCCTAAAGAGCAGATCCAAGCTTATGTCTTTGATGTGGTTAGGGCTTTGGTCCCAATGAT 448
Query 362 GACGCTGGATGCTCTTTTTGAACAAAAGGGTGAAGTTGCCAAGTCTGTTCTTGAGGAACT 421
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 449 GACGCTTGATGCTCTTTTTGAACAAAAGGGTGAAGTTGCCAAGTCTGTTCTTGAGGAGCT 508
Query 422 TGAGAAGGTGATGGGTGCTTATGGATACAGCATTGAGCATATTCTAATGGTTGACATTCT 481
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 509 TGAGAAGGTGATGGGTGCTTATGGATACAGCATTGAGCACATTCTAATGGTTGACATTAT 568
Query 482 TCCTGATCCCTCTGTACGCAAGGCAATGAACGAAATCAATGCAGCACAAAGACTCCAGCT 541
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 569 TCCTGATCCCTCTGTACGCAAGGCAATGAACGAAATCAATGCAGCACAAAGGCTCCAGCT 628
Query 542 CGCGAGTGTTTACAAAGGAGAAGCAGAGAAGATTCTCCAAGTGAAGAGAGCGGAAGCAGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 629 CGCGAGTGTTTACAAAGGAGAAGCAGAGAAGATTCTCCAAGTGAAGAGAGCCGAAGCAGA 688
Query 602 AGCGGAAGCCAAGTACTTAGGTGGTGTCGGGGTGGCTAGACAGAGGCAAGCAATCACAGA 661
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 689 AGCGGAAGCCAAGTACTTAGGTGGTGTCGGTGTGGCTAGACAAAGACAAGCAATCACAGA 748
Query 662 CGGATTGAGGGAGAACATATTGAACTTCTCTGACAAAGTAGAAGGCACATCAGCCAAAGA 721
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 749 CGGATTGAGGGAGAACATATTGAACTTTTCTGACAAAGTAGAAGGCACATCCGCCAAAGA 808
Query 722 AGTGATGGACTTGATCATGATCACACAGTACTTTGACACTATAAGAGACCTTGGAAACTC 781
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 809 AGTGATGGACTTGATCATGATCACACAGTACTTTGACACTATTAGAGACCTTGGAAACTC 868
Query 782 GTCAAAGAACACAACGGTGTTTCTCCCGCACGGTCCGGGACATGTGAGGGACATCAGCGA 841
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 869 GTCAAAGAACACAACGGTGTTTCTCCCACACGGTCCGGGACATGTGAGGGACATCAGCGA 928
Query 842 CCAGATACGCAACGGTATGATGGAGGCAGCGGCTAGTGCTCCGGTCAACGACGTCTAGAG 901
||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||
Sbjct 929 CCAGATACGCAACGGTATGATGGAGGCGGCCGCTAGTACTCAGGTCAACGACGTCTAGAG 988
Query 902 AGAGATTCACTTCGGCTTGT 921
||||||||||||||||||||
Sbjct 989 AGAGATTCACTTCGGCTTGT 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5