BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952368
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51560.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3295 0.0
> AT5G51560.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:20945685-20948854 FORWARD LENGTH=2406
Length=2406
Score = 3295 bits (1784), Expect = 0.0
Identities = 1986/2085 (95%), Gaps = 8/2085 (0%)
Strand=Plus/Plus
Query 1 CCAAACCCTAGGAAAAAACAATGACGGCGACACAAATGCTGcttcatcttcttcttcttc 60
|||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 105 CCAAACCCTA-GAAATAA-AATGACGGCGACACAAATGCTGCTTCATCTTCTTCTTCTTC 162
Query 61 cacttctcttcGTTTGCTTCAGTAACCAAGT-AGGAGCAGAACTTACCGAGGAGTTAACG 119
||||||||||| || |||||| |||||||| | | |||||| | ||||| |||||| ||
Sbjct 163 CACTTCTCTTCCTTCACTTCAGCAACCAAGTCATG-GCAGAAATCACCGACGAGTTAGCG 221
Query 120 ACATTGCTGGAGGTTAAAACAGAGCTAGACCCAGAAGACAAACACTTAGCTTCATGGAGT 179
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 222 ACATTGATGGAGGTTAAAACAGAGCTTGACCCAGAAGACAAACACTTAGCTTCATGGAGT 281
Query 180 ATTAATGGAGATCTGTGTAAAGACTTTGAAGGTGTTGGTTGTGACTGGAAAGGACGAGTT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GTTAATGGAGATCTGTGTAAAGACTTTGAAGGTGTTGGTTGTGACTGGAAAGGACGAGTT 341
Query 240 TCTAACATATCTTTACAAGGGAAAGGATTGTCTGGTAAAATCTCTCCGAACATTGGAAAG 299
|||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 342 TCTAACATATCTCTACAAGGGAAAGGCTTATCTGGTAAAATCTCTCCGAACATTGGAAAG 401
Query 300 CTTAAACATTTGACGGGTTTGTTCTTGCATTACAATGCTCTTGTCGGAGACATTCCTAGA 359
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 402 CTTAAACATTTGACGGGTTTGTTCTTGCACTACAATGCTCTTGTTGGAGATATTCCTAGA 461
Query 360 GAACTTGGTAACTTGTCTGAGCTTACGGATCTTTATCTCAATGTTAATAATCTCTCCGGT 419
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 462 GAACTTGGTAACTTGTCGGAACTTACGGATCTTTATCTCAATGTTAATAATCTCTCCGGT 521
Query 420 CAGATTCCTTCAAACATTGGGAAGATGCAAGGCTTGCAAGTTTTGCAGCTCTGTTACAAC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GAGATTCCTTCAAACATTGGGAAGATGCAAGGCTTGCAAGTTTTGCAGCTCTGTTACAAC 581
Query 480 AATTTGACAGGAAGCATTCCTAGGGAGCTTGGTTCACTGAGGAAGCTGAGTGTTCTTGCT 539
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 582 AATTTGACTGGAAGCATTCCTAGGGAGCTTAGTTCACTGAGGAAGCTGAGTGTTCTTGCT 641
Query 540 CTTCAATCTAACAAACTCACTGGAGCTATACCTGCGAGTTTAGGAGAGATAAGTGCTCTA 599
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 642 CTTCAATCTAACAAACTCACTGGAGCTATACCTGCGAGTTTAGGAGATTTAAGTGCTCTA 701
Query 600 GAGCGTCTAGATTTGAGCTACAATCACTTGTTTGGTTCTGTACCAGGCAAGTTAGCTAGC 659
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 702 GAGCGGCTAGATTTGAGCTACAATCATTTGTTTGGTTCTGTACCAGGCAAGTTAGCTAGC 761
Query 660 CCTCCTTTGCTTCGAGTTCTCAACATCCGAAACAACTCCCTCACTGGCAATGTACCTCCT 719
|||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 762 CCTCCTCTGCTTCGAGTTCTCGACATCCGCAACAACTCCCTCACTGGCAATGTACCTCCT 821
Query 720 GTACTGAAGAGATTGAATGAAGGTTTTTCTTTTGAGAACAACTTGGGGCTATGTGGAGCT 779
|||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 822 GTACTGAAGAGATTAAATGAAGGTTTTTCGTTTGAAAACAACTTGGGACTATGTGGAGCT 881
Query 780 GAATTTTCACCTTTGAAATCTTGCAATGGCACAGCTCCTGAGGAACCTAAGCCGTACGGT 839
|| || || || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 882 GAGTTCTCGCCGTTGAAATCTTGCAATGGCACAGCTCCTGAGGAACCTAAGCCATACGGT 941
Query 840 GCAACTGTGTTTGGTTTTCCATCCCGGGATATACCAGAATCAGCTAATCTTCGGTCACCT 899
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 942 GCAACCGTGTTTGGTTTTCCATCCCGGGATATACCAGAATCAGCTAATCTACGGTCACCT 1001
Query 900 TGTAATGGAACAAACTGTAATGCTCCTCCAAAATCTCACCAAGGTGCAATCCTTATCGGT 959
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1002 TGTAATGGAACAAACTGTAATACTCCTCCAAAATCTCACCAAGGTGCAATCCTTATTGGT 1061
Query 960 TTAGTTGTTTCGACTATCGCCTTGTCTGCTATTAGCATCCTCTTGTTCACGCATTATCGC 1019
|| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TTGGTTGTCTCGACTATTGCATTGTCTGCTATTAGCATCCTCTTGTTCACGCATTATCGC 1121
Query 1020 AGACGCAAACAGAAGCTTTCAACTGCTTATGAAATGTCGGAC-ACTCGTGTCAACACCGT 1078
||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 1122 AGACGCAAACAGAAGCTTTCAACCACTTATGAAATGTCGGACAAC-CGTCTCAACACCGT 1180
Query 1079 AGGAGGAGGCTTTAGGAAGAACAATGGTTCTCCATTGGCCAGTCTTGAATATACCAGTGG 1138
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1181 AGGAGGAGGTTTTAGGAAGAACAATGGTTCTCCATTGGCCAGTCTTGAATATACTAATGG 1240
Query 1139 TTGGGATCCTCTTTCAGACAATAGGAATCTTAGTGTCTTTGCTCAAGAAGTTATCCAGAG 1198
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1241 TTGGGATCCACTTTCAGACAATAGGAATCTCAGTGTCTTTGCTCAAGAAGTTATCCAGAG 1300
Query 1199 CTTTCGATTTAATCTAGAAGAGGTTGAAACTGCTACACAGTATTTCTCAGAAGTGAATTT 1258
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 CTTTCGATTCAATCTTGAAGAGGTTGAAACTGCTACACAGTATTTCTCAGAAGTGAATTT 1360
Query 1259 GCTTGGAAGAAGCAACTTCTCTGCGACTTACAAAGGAATCTTGAGAGATGGTTCGGCTGT 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1361 GCTTGGAAGAAGCAACTTCTCTGCGACTTACAAAGGAATCTTGAGAGATGGTTCTGCTGT 1420
Query 1319 AGCGATCAAACGGTTTAGTAAAACCAGTTGCAAATCCGAAGAACCTGAGTTCTTGAAAGG 1378
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1421 AGCGATCAAACGGTTTAGTAAAACAAGTTGCAAATCTGAAGAACCTGAGTTCTTGAAAGG 1480
Query 1379 AGTCAACATGTTGGCGTCTCTGAAACATGAAAACTTGGCAAAACTTAGAGGTTTCTGCTG 1438
| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1481 ACTCAACATGTTGGCGTCTCTGAAACATGAAAACTTGTCAAAACTTAGAGGCTTCTGCTG 1540
Query 1439 TTCAAGAGGCCGTGGAGAATGCTTTCTGATCTATGATTTTGCTCCCAATGGAAATCTT-C 1497
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| || |
Sbjct 1541 TTCAAGAGGCCGTGGAGAATGTTTTCTCATCTATGATTTTGCTCCTAATGGAAAT-TTAC 1599
Query 1498 TGAGCTATCTCGATCTCAAAGATGGCGATGCACATGTTCTTGACTGGTCCACGAGAGTAT 1557
|||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1600 TGAGCTATCTTGATCTCAAAGATGGTGATGCGCATGTTCTTGATTGGTCCACGAGAGTAT 1659
Query 1558 CCATCGCTAAAGGCATCGCAAAAGGGATTGCTTATCTGCATTCATACAAAGGAAGCAAAC 1617
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1660 CCATTGCTAAAGGCATCGCAAAAGGGATTGCTTATCTACATTCATACAAAGGAAGCAAGC 1719
Query 1618 CAGCATTGGTTCACCAAAACATCTCAGCGGAGAAAGTCCTAATCGACCAGCGATACAATC 1677
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1720 CAGCATTGGTTCACCAAAACATCTCAGCGGAGAAAGTTCTAATCGACCAGCGATACAGTC 1779
Query 1678 CGCTACTCTCAAACTCAGGCCTCCACACGCTTCTCACAAACGACATTGTCTTCTCTGCAC 1737
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1780 CTCTACTCTCAAACTCAGGCCTCCACACACTTCTCACAAACGACATTGTCTTCTCTGCAC 1839
Query 1738 TCAAAGACAGTGCAGCAATGGGCTATCTCGCCCCAGAATACACCACAACAGGACGTTTCA 1797
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1840 TCAAAGACAGTGCAGCAATGGGCTACCTCGCTCCAGAATACACCACAACCGGACGTTTCA 1899
Query 1798 CCGAGAAAACGGATGTCTACGCTTTCGGGATTCTTGTGTTTCAGATAATCTCCGGGAAAC 1857
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 CCGAGAAAACCGATGTCTACGCTTTCGGGATTCTTGTGTTTCAGATAATCTCCGGGAAAC 1959
Query 1858 AGAAGGTTAGACATCTTGTTAAGCTTGGAACTGAAGCTTGTAGGTTCAATGATTACATCG 1917
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1960 AGAAGGTTAGGCATCTTGTTAAGCTTGGAACTGAAGCTTGTAGGTTCAATGATTACATAG 2019
Query 1918 ATCCAAATCTTCAAGGAAGATTCTTTGAATATGAAGCCACAAAGCTAGCTAGAATTGCTT 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2020 ATCCAAATCTTCAAGGAAGATTCTTTGAATATGAAGCCACAAAGCTAGCTAGAATCGCGT 2079
Query 1978 GGCTGTGCACTCATGAATCTCCCATTGAAAGACCATCCGTGGAAGCTGTTGTTCATGAGC 2037
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2080 GGCTATGCACTCATGAATCTCCCATTGAAAGACCATCCGTGGAAGCTGTAGTTCATGAGC 2139
Query 2038 TCGGTAACTGTAGTAGCTGTCTCTGAGAACTCTCTTGAGGCCAAT 2082
| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2140 TAGGTAACTGTAGTAGCTGTCTCTGAGAACTCTCTCGAGGCAAAT 2184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103312721610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5