BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952370
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51500.1 | Symbols: | Plant invertase/pectin methylesterase... 584 3e-166
AT5G51490.1 | Symbols: | Plant invertase/pectin methylesterase... 472 3e-132
> AT5G51500.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:20917929-20919838 REVERSE LENGTH=1623
Length=1623
Score = 584 bits (316), Expect = 3e-166
Identities = 391/428 (91%), Gaps = 2/428 (0%)
Strand=Plus/Plus
Query 218 GTCAAGCCAATGTGATAACCGCACAAGGTCGTACTGATCTAATTCAAAACACAGGGATCT 277
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1196 GTCAAGCCAATGTAATAACCGCACAAGGTCGTACTGATCTATTTCAGAACACAGGGATCT 1255
Query 278 CTATCCATAACTCAATAATCATACCGGCTCATGATC-TAAAACTGGTGGTCCGTAGCGTT 336
|||| |||||||||||||||||||| |||| ||| | |||||| |||||||||||| |||
Sbjct 1256 CTATTCATAACTCAATAATCATACCCGCTCCTGA-CTTAAAACCGGTGGTCCGTAGTGTT 1314
Query 337 AAAACCTATATGGGCCGACCTTGGATGAAGTACTCGCGCACTGTGGTTCTTAAGACGTAT 396
|| || |||||||| ||||| ||||||| |||||| ||||| |||||||||||||||||
Sbjct 1315 AAGACATATATGGGTCGACCCTGGATGATGTACTCCCGCACCGTGGTTCTTAAGACGTAC 1374
Query 397 ATAGATAGTGTTGTGAATGCGGTCGGGTGGTCACCGTGGACTAAAGGTTCGACATATGGT 456
|| ||||||||||||| | | ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1375 ATCGATAGTGTTGTGAGTCCTGTCGGGTGGTCTCCGTGGACTAAAGGTTCGACGTATGGT 1434
Query 457 CTCAACACGCTGTTCTATGCAAAATATAAGAATATCGGACCGGCTTCATCCACGAGGTGG 516
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CTCGACACGCTGTTCTATGCGGAATATAAGAATATCGGACCGGCTTCATCCACGAGGTGG 1494
Query 517 CGAGTCCGTTGGAAAGGGTTTCATGTCTTGAGTAAAGCCTCTGATGTATCTGCTTTCACT 576
|| ||||||||||||||||||||||| ||||||||||| || |||| |||||||||| ||
Sbjct 1495 CGTGTCCGTTGGAAAGGGTTTCATGTGTTGAGTAAAGCTTCCGATGCATCTGCTTTCTCT 1554
Query 577 GTTGGAAAATTCATAGCTGGTACTGCGTGGCTCCCAAGCACTGGCATACCCTTCACTTTA 636
|||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 1555 GTTGGAAAATTCATCGCTGGTACTGCGTGGCTCCCAGGCTCTGGCATACCCTTCACTTCA 1614
Query 637 GAACTCTA 644
||||||||
Sbjct 1615 GAACTCTA 1622
> AT5G51490.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:20913553-20915606 REVERSE LENGTH=1738
Length=1738
Score = 472 bits (255), Expect = 3e-132
Identities = 385/449 (86%), Gaps = 4/449 (1%)
Strand=Plus/Plus
Query 218 GTCAAGCCAATGTGATAACCGCACAAGGTCGTACTGATCTAATTCAAAACACAGGGATCT 277
||||||||||||| || ||||||||||||||| |||||| |||| |||||||||||||
Sbjct 1184 GTCAAGCCAATGTAATTACCGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCT 1243
Query 278 CTATCCATAACTCAATAATCATACCGGCTCATGATCTAAAACTGGTGGTCCGTAGCGTTA 337
||||||||||||||| |||| ||||||||| ||||||||||| |||||| ||| |||||
Sbjct 1244 CTATCCATAACTCAAGAATCCTACCGGCTCCTGATCTAAAACCAGTGGTCGGTACCGTTA 1303
Query 338 AAACCTATATGGGCCGACCTTGGATGAAGTACTCGCGCACTGTGGTTCTTAAGACGTATA 397
| || || |||||||| ||||||||||||| ||| || || ||||||||| ||||||||
Sbjct 1304 AGACGTACATGGGCCGGCCTTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTATT 1363
Query 398 TAGATAGTGTTGTGAATGCGGTCGGGTGGTCACCGTGGACTAAAGGTTCGACATATGGTC 457
| |||| |||||||| | | ||||||||||| ||||||| | |||||||| | |||||
Sbjct 1364 TGGATAATGTTGTGAGTCCAGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGGTC 1423
Query 458 TCAACACGCTGTTCTATGCAAAATATAAGAATA-TCGGACCGGCTTCATCCACGAGGTGG 516
| |||| || ||||||||| |||||||||||| | ||||| ||||||||||||||||||
Sbjct 1424 TGGACACTCTCTTCTATGCAGAATATAAGAATACT-GGACCAGCTTCATCCACGAGGTGG 1482
Query 517 CGAGTCCGTTGGAAAGGGTTTCATGTCTTGAGTAAAGCCTCTGATGTATCTGCTTTCACT 576
|| ||| ||||||||||||||||||| ||| ||| ||| || |||| |||||||||||||
Sbjct 1483 CGTGTCAGTTGGAAAGGGTTTCATGTGTTGGGTAGAGCTTCCGATGCATCTGCTTTCACT 1542
Query 577 GTTGGAAAATTCATAGCTGGTACTGCGTGGCTCCCAAGCACTGGCATACCCTTCACTT-T 635
|||||||| || || |||||||| || ||||||||| |||| |||||||||||||||| |
Sbjct 1543 GTTGGAAAGTTTATCGCTGGTACAGCATGGCTCCCACGCACCGGCATACCCTTCACTTCT 1602
Query 636 AGAACTCTAGAGGCCGTCTTTGGTTTTTC 664
|| ||||| || ||||||||||||||||
Sbjct 1603 GGA-CTCTAAAGACCGTCTTTGGTTTTTC 1630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5