BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952372

Length=463
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61660.1 | Symbols:  | glycine-rich protein | chr5:24779215-...   619    6e-177


> AT5G61660.1 | Symbols:  | glycine-rich protein | chr5:24779215-24779930 
REVERSE LENGTH=716
Length=716

 Score =  619 bits (335),  Expect = 6e-177
 Identities = 424/464 (91%), Gaps = 17/464 (4%)
 Strand=Plus/Plus

Query  1    AACCCTaaaaaaaGATAGAAAATGATCAAAGGGTTCTTGTTGGtttttttctttttAATC  60
            |||||||| || | || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct  48   AACCCTAAGAATATATCGAAAATGATCAAAGGGCTCTTGTTGGTTTTTTTCTTTTTAATC  107

Query  61   ACTGCAAAGACTTCGGTTTCCCGTCCGTTCGCATGGTCGAGGGGTAACATGCCAGGCCAA  120
            |||||||||||||| ||||| |||||||| ||||||||||| ||||||||     | |  
Sbjct  108  ACTGCAAAGACTTCTGTTTCACGTCCGTTTGCATGGTCGAGAGGTAACAT-----G-C--  159

Query  121  AACTACCCCGGCGAAAGTGGGTCGGGCCGTGGGCCCAATTGGGAGTACAACTGGGGTTGG  180
              | |    |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  160  --C-A----GGCGAAAGTGGGTCGGGCCGTGGGCCGAATTGGGAGTACAATTGGGGTTGG  212

Query  181  GGCTCTGCTCCAGGATCTGGATGGGGATT-CGGATCAGGCTCGGGTAGATCACCAACAGG  239
            |||||||||||||||||||||||||| || |||  ||||||| |||||||||||||||||
Sbjct  213  GGCTCTGCTCCAGGATCTGGATGGGG-TTACGGGGCAGGCTCAGGTAGATCACCAACAGG  271

Query  240  ATGGGGAAGAGGATCCGGATACGGTTATGGATCCGGATCCGGATCAGGTACCGGATATGG  299
            ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct  272  ATGGGGAAGAGGATCCGGATACGGTTATGGATCTGGATCGGGATCAGGTACCGGGTATGG  331

Query  300  ATATGGTTCTGGAGGTGGTGGAGCACgtggtggtggatatggttacggaagcggaaatgg  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  332  ATATGGTTCTGGAGGTGGTGGAGCACGTGGTGGTGGATATGGTTACGGAAGCGGAAATGG  391

Query  360  ccggtctggtggaggtggtggtggtggtggtTCCAACGGTGAAGTTGCCGCTTTGAGCCA  419
             ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  392  TCGGTCTGGTGGCGGTGGTGGTGGTGGTGGTTTCAACGGTGAAGTTGCCGCTTTGAGCCA  451

Query  420  CGGTAGTAAGATTCATCCGTAAGGATGTTTTATTTGGTAATTTC  463
             |||||||||||||||||||||||| |||| |||||||||||||
Sbjct  452  TGGTAGTAAGATTCATCCGTAAGGACGTTTGATTTGGTAATTTC  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22067541811


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5