BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952380

Length=1166
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45080.1 | Symbols: AtPP2-A6, PP2-A6 | phloem protein 2-A6 |...   394    1e-108


> AT5G45080.1 | Symbols: AtPP2-A6, PP2-A6 | phloem protein 2-A6 
| chr5:18191575-18193207 REVERSE LENGTH=1179
Length=1179

 Score =  394 bits (213),  Expect = 1e-108
 Identities = 326/379 (86%), Gaps = 14/379 (4%)
 Strand=Plus/Plus

Query  777   ATTGATATTGTGACGATGAAAAAAGTTTACTGGCTTAAAATAGTCGGAACATTCAA-AAC  835
             ||||| |||| |||| |||| ||||||||||||||||||||||| |||||| | ||  ||
Sbjct  805   ATTGAAATTGCGACGTTGAATAAAGTTTACTGGCTTAAAATAGTGGGAACAAT-AACTAC  863

Query  836   GGGGGATCTAACACCAGGAACAAAGTATGAGGTTGTGTTTGTAGTGAAATTA-AAAGATA  894
             || | |||||||||||||| | ||||| |||| ||| || ||||| |||||| ||| |||
Sbjct  864   GGAGAATCTAACACCAGGAGCTAAGTACGAGGCTGTATTCGTAGTCAAATTAGAAA-ATA  922

Query  895   ATGCAATTGGATGGGAGAAACCAGTGACTCTGAAGCTGAAGGTGATACACCACAATGGAG  954
             |||| | |||||||||| ||||||||| ||| |||||||||||| |||| ||| |||| |
Sbjct  923   ATGCTAGTGGATGGGAGCAACCAGTGAATCTAAAGCTGAAGGTGGTACAACACGATGGGG  982

Query  955   ACAACGATCGGGTGGAACGAATAGAGAACTTGAACGATTACATAGGCC-GCAACTGGGTG  1013
             || ||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||
Sbjct  983   ACGACGATCGGGTGGATCGAACAGAGAACTTGAACGATTACATAGGCCAG-AACTGGGTG  1041

Query  1014  GATATTTTGGCCGGAGTTTTTGTGGTTCCGCCGAAAAAC-ACTCCCGCAATTATTACTTT  1072
             |||||||||||||||||||| ||||||||||| |||||| ||||||||||  || | |||
Sbjct  1042  GATATTTTGGCCGGAGTTTTCGTGGTTCCGCC-AAAAACTACTCCCGCAACGATCATTTT  1100

Query  1073  CACCATGTATGAG-ACC--GA-A--TATAAGAAAAAAGGACTCGTCGTCAAAGGGGTTAC  1126
             |||||||||| || ||   || |  ||||||||||| ||||||||||||||||| ||| |
Sbjct  1101  CACCATGTATCAGTACGAAGACAAGTATAAGAAAAAGGGACTCGTCGTCAAAGGTGTTGC  1160

Query  1127  AATTCGTCCCACGAACTAA  1145
             ||| |||||||||||||||
Sbjct  1161  AATACGTCCCACGAACTAA  1179



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 57228621300


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5