BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952385
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50320.1 | Symbols: ELO3, HAG3, HAC8, ELP3, AtELP3 | radical... 767 0.0
> AT5G50320.1 | Symbols: ELO3, HAG3, HAC8, ELP3, AtELP3 | radical
SAM domain-containing protein / GCN5-related N-acetyltransferase
(GNAT) family protein | chr5:20480626-20484850 REVERSE
LENGTH=2311
Length=2311
Score = 767 bits (415), Expect = 0.0
Identities = 474/503 (94%), Gaps = 2/503 (0%)
Strand=Plus/Plus
Query 1 TTTTGGTCCTGAGG-TTTCGCGACGATGGCGACGGCGGTAGTGATGAACGGCGAGTTGAA 59
||||||| |||||| ||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 16 TTTTGGT-CTGAGGTTTTGGTGACGATGGCGACGGCGGTAGTGATGAACGGCGAGCTGAA 74
Query 60 AAAACAACCTCGGCCAGGTAAAGGCGGCTATCAGGGCCGTGGATTAACTGAGGAAGAAGC 119
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 75 AAAGCAACCTCGGCCAGGTAAAGGCGGCTATCAGGGCCGTGGATTAACTGAAGAAGAAGC 134
Query 120 TAGAGTTCGCGCTATATCGGAGATTGTTAGCACCATGATTGAGCGCTCACACCGCAACGA 179
| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 135 TCGAGTTCGCGCCATATCGGAGATTGTTAGCACCATGATTGAGCGTTCACACCGCAACGA 194
Query 180 GAATGTTGACCTAAACGCAATCAAAACCGCCGCTTGCCGGAAATACGGCTTAGCGCGTGC 239
||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct 195 GAATGTTGACCTAAACGCAATTAAAACCGCCGCTTGCCGGAAATACGGCCTAGCACGTGC 254
Query 240 ACCAAAGCTTGTGGAGATGATCGCTGCGCTTCCTGATTCAGAGAGAGAGACTCTTCTCCC 299
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 255 GCCTAAGCTCGTGGAGATGATTGCTGCGCTTCCTGATTCAGAGAGAGAGACTCTTCTCCC 314
Query 300 GAAGCTCCGTGCTAAACCGGTCCGAACAGCTTCAGGAATCGCAGTCGTGGCGGTTATGTC 359
|||||||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct 315 GAAGCTCCGTGCCAAACCGGTTCGAACAGCTTCAGGGATCGCCGTTGTGGCGGTTATGTC 374
Query 360 GAAGCCTCATAGGTGTCCGCATATAGCTACGACGGGTAATATATGTGTGTATTGTCCCGG 419
||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 375 GAAGCCTCATAGGTGCCCGCATATAGCTACGACGGGGAATATATGCGTTTATTGTCCCGG 434
Query 420 TGGACCTGACTCTGACTTTGAGTATAGTACTCAGTCTTACACTGGATACGAGCCCACCAG 479
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 435 TGGACCTGACTCTGACTTTGAGTATAGTACTCAGTCTTACACTGGATATGAGCCTACCAG 494
Query 480 TATGCGAGCTATTCGAGCCAGGT 502
||||||||||||||||||||||
Sbjct 495 CATGCGAGCTATTCGAGCCAGGT 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5