BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952394
Length=478
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57530.1 | Symbols: XTH12, AtXTH12 | xyloglucan endotransglu... 599 8e-171
AT5G57540.1 | Symbols: XTH13, AtXTH13 | xyloglucan endotransglu... 512 1e-144
> AT5G57530.1 | Symbols: XTH12, AtXTH12 | xyloglucan endotransglucosylase/hydrolase
12 | chr5:23300321-23301605 REVERSE LENGTH=1062
Length=1062
Score = 599 bits (324), Expect = 8e-171
Identities = 384/413 (93%), Gaps = 4/413 (1%)
Strand=Plus/Plus
Query 68 CTTTCTTGTGGACGGGATCCCAATCCGGGTGTTCAAGAACAACGAGGCTAACGGCGTTGC 127
|||||| || || || |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 524 CTTTCTGGTTGATGGTATCCCAATCCGGGTGTTCAAGAACAATGAGGCTAACGGCGTGGC 583
Query 128 TTACCCGAAAAACCAACCAATGAAGATCTACTCGAGTCTTTGGGAAGCTGATGATTGGGC 187
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 584 TTACCCGAAAAGCCAACCAATGAAGATCTACTCAAGTCTATGGGAAGCTGATGATTGGGC 643
Query 188 CACACAAGGCGGGAGAGTCAAGATCGATTGGACTAACGCTCCATTCAGCGCTTCCTACAA 247
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 644 CACACAAGGCGGGAAAGTCAAGACCGATTGGACCAACGCTCCATTCAGCGCTTCCTACAG 703
Query 248 AAG-TTTCAACGATGTGGACTGCTGCAGCCGGACCTCGATATGGGACTGGGTTACCTGTA 306
||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||| ||||
Sbjct 704 AAGCTTT-AACGATGTGGATTGCTGCAGCCGGACCTCGATATGGAACTGGGTTACGTGTA 762
Query 307 ATGCGAATAGCAACTCGTGGATGTGGACTACGCTTAACGCAAATCAGCTTGGACAGCTGA 366
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 763 ATGCGAATAGCAACTCGTGGATGTGGACTACACTTAATTCAAATCAGCTTGGACAGCTGA 822
Query 367 AGTGGGTGCAAGATGATTATATGATCTATAACTATTGTACAGATTTCAAGAGGTTCCCTC 426
||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 823 AGTGGGTGCAAAAAGATTATATGATCTATAACTATTGTACGGATTTCAAGAGGTTCCCTC 882
Query 427 AAGGTTTACCCACGGAATGCAACCACAATTGATCGTATTACCA-AGAAAATTC 478
||||||||||||| |||||||||| ||| |||||||||||| | |||||||||
Sbjct 883 AAGGTTTACCCACTGAATGCAACCTCAACTGATCGTATTAC-AGAGAAAATTC 934
> AT5G57540.1 | Symbols: XTH13, AtXTH13 | xyloglucan endotransglucosylase/hydrolase
13 | chr5:23302996-23304049 REVERSE LENGTH=855
Length=855
Score = 512 bits (277), Expect = 1e-144
Identities = 355/393 (90%), Gaps = 4/393 (1%)
Strand=Plus/Plus
Query 68 CTTTCTTGTGGACGGGATCCCAATCCGGGTGTTCAAGAACAACGAGGCTAACGGCGTTGC 127
|||||| ||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 465 CTTTCTCGTGGATGGAATCCCAATCCGAGTGTTCAAGAACAACGAGGCTAATGGCGTGGC 524
Query 128 TTACCCGAAAAACCAACCAATGAAGATCTACTCGAGTCTTTGGGAAGCTGATGATTGGGC 187
|||||||| | ||| ||||||||||| || || ||||||||||||||||||||||||||
Sbjct 525 CTACCCGAAGAGCCAGCCAATGAAGATTTATTCAAGTCTTTGGGAAGCTGATGATTGGGC 584
Query 188 CACACAAGGCGGGAGAGTCAAGATC-GATTGGACTAACGCTCCATTCAGCGCTTCCTACA 246
||||||||||||| |||||||| | |||||||| || ||||||||||||||||||||||
Sbjct 585 TACACAAGGCGGGAAAGTCAAGA-CAGATTGGACCAATGCTCCATTCAGCGCTTCCTACA 643
Query 247 AAAGTTTCAACGATGTGGACTGCTGCAGCCGGACCTCGATATGGGACTGGGTTACCTGTA 306
|||||||||||||||||||||||||||||||||||||| | | | | ||||| || ||||
Sbjct 644 AAAGTTTCAACGATGTGGACTGCTGCAGCCGGACCTCGTTGTTGAATTGGGTAACATGTA 703
Query 307 ATGCGAATAGCAACTCGTGGATGTGGACTACGCTTAACGCAAATCAGCT-TGGACAGCTG 365
||||||||||||||||||||||||||||||| |||||| |||||||| | ||||||| ||
Sbjct 704 ATGCGAATAGCAACTCGTGGATGTGGACTACCCTTAACTCAAATCAG-TATGGACAGATG 762
Query 366 AAGTGGGTGCAAGATGATTATATGATCTATAACTATTGTACAGATTTCAAGAGGTTCCCT 425
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 763 AAGTGGGTGCAAGATGATTATATGATCTATAACTATTGTACGGATTTTAAGAGGTTCCCT 822
Query 426 CAAGGTTTACCCACGGAATGCAACCACAATTGA 458
|||||||| || ||||||||||| | ||| |||
Sbjct 823 CAAGGTTTGCCTACGGAATGCAATCTCAACTGA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22756068591
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5