BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952398
Length=289
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 425 9e-119
AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 191 3e-48
> AT1G53620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53610.1); Has
5795 Blast hits to 2209 proteins in 338 species: Archae -
0; Bacteria - 1555; Metazoa - 2403; Fungi - 181; Plants - 1035;
Viruses - 76; Other Eukaryotes - 545 (source: NCBI BLink).
| chr1:20011429-20011925 REVERSE LENGTH=497
Length=497
Score = 425 bits (230), Expect = 9e-119
Identities = 262/277 (95%), Gaps = 3/277 (1%)
Strand=Plus/Plus
Query 14 aaaaGGTATAATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGGTATTTT 73
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 9 AAAAGATATAATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGTTATTTT 68
Query 74 CGTGTTGACTGTCATATGTTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCG 133
|||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||
Sbjct 69 CGTGTTGACTGTCATATGCTGTATCTCCCATAGGAAGAAAGAGCCTTTGTTTCAGCCGCG 128
Query 134 GGATTTGGAAAAAGGTTTAGCGGGAATAAAAGATGCGAGGACTTGTTGTTTTGACCGGAA 193
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 129 GGATTTGGAAAACGGTTTAGCGGGAATAAAAGATG-GAGGACTTGTTGTTTTGACAGGAA 187
Query 194 CAGCTGTTGTAGGTGCGGCTGTAACCACAGCACGTTCTGGCGGTTGCGGCGGTGGAGGAG 253
|||||||||| | ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 188 CAGCTGTTGTTGCTGCGGGTGTAACCACAGAACGTTCTGGCGGTTGCGGCGGTGGAGGAG 247
Query 254 ATGGTGGCGGTTGTGAAGGTGATGCTG-TCGGAGGAG 289
|||||||||||||||| |||||||||| | |||||||
Sbjct 248 ATGGTGGCGGTTGTGATGGTGATGCTGGT-GGAGGAG 283
> AT1G53610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53620.1); Has
14 Blast hits to 14 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20008996-20009320
REVERSE LENGTH=285
Length=285
Score = 191 bits (103), Expect = 3e-48
Identities = 148/170 (87%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 24 ATGGAGCCTGTTGTTAATGTCATCATTATATTAGGTGCCTGTGGTATTTTCGTGTTGACT 83
||||||||||||||||||||| | ||| | || |||||||| |||||||| ||||| |
Sbjct 1 ATGGAGCCTGTTGTTAATGTCGTTATTGCAGTATCTGCCTGTGTTATTTTCGCGTTGATT 60
Query 84 GTCATATGTTGTGTCTCCCATAGGAAGAAAGAGCCTTTGTCTCAGCCGCGGGATTTGGAA 143
|||||| | ||||||||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 61 GTCATAGGCTGTGTCTCCTATAGGAAGAAAGAGCCTTTGTCTCAGCCACGAGATTTGGAA 120
Query 144 AAAGGTTTAGCGGGAATAAAAGATGCGAGGACTTGTTGTTTTGACCGGAA 193
| ||| || |||||| |||||||| ||||||||||||||||||| ||||
Sbjct 121 ACGGGTGTAACGGGAACAAAAGATG-GAGGACTTGTTGTTTTGACAGGAA 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13320953485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5