BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952399
Length=940
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29570.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1051 0.0
> AT4G29570.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr4:14507398-14508482 FORWARD LENGTH=1085
Length=1085
Score = 1051 bits (569), Expect = 0.0
Identities = 810/923 (88%), Gaps = 30/923 (3%)
Strand=Plus/Plus
Query 21 ATGGCACAGCCCTTTCGCTTCATGCTCAATCAAACAGAAACAGAATCCTACGGCGCTTTC 80
|||||||||||| | ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1 ATGGCACAGCCCATGCGCTTCATGCTCAATCATATAGAAACAGAATCCTACGGCGCTTTC 60
Query 81 ATCCCC-CGAAACCTTAGGCCGCTGATCGATCGTGCCATTCCACACGCTCGAGCTCAAAT 139
| |||| | ||||||||| ||||||||| ||||||| ||||||||| |||||||||||||
Sbjct 61 A-CCCCTCAAAACCTTAGTCCGCTGATCAATCGTGCGATTCCACACACTCGAGCTCAAAT 119
Query 140 CTCGGGATCACCCGTCGTAGCCATCGGCCTTGCATCATCAGGTCAGACCTACTTTGGCGT 199
||| |||||||| ||||||||| |||||| | ||||||||||| ||||| |||||||||
Sbjct 120 CTCCGGATCACCTGTCGTAGCCGTCGGCCGAGGATCATCAGGTCGGACCTTCTTTGGCGT 179
Query 200 CAATGTGGAATTACCAGGTCTGCCTCCTAACTACTCCATACACGCCGAACAGTTCCTTGT 259
|||||||||||||||||||||||||| | || ||||||| |||||||||||||||||| |
Sbjct 180 CAATGTGGAATTACCAGGTCTGCCTCTTGACCACTCCATCCACGCCGAACAGTTCCTTCT 239
Query 260 CGCCAACTTCGCCCTCCACTTCGAGCTAAAACTC-ATAGGCTTAGCCATCTCCCCTAACG 318
||||||| |||||||||||||||||| ||||||| | | || ||||||||||| ||||||
Sbjct 240 CGCCAACCTCGCCCTCCACTTCGAGCAAAAACTCGA-ATGCATAGCCATCTCCACTAACG 298
Query 319 GCTACTACTTCAAGGCGCCATGCGGCCACTGCTGCCAATTTCTTCGGGAAATCAGCA-AT 377
||||||||||| ||| |||||||||||||||||||||||| |||| ||||||| | ||
Sbjct 299 GCTACTACTTCCAGGAGCCATGCGGCCACTGCTGCCAATTACTTCATAAAATCAG-AGAT 357
Query 378 ATGTCTGATACCAAAGTCTTGATCACGGGCCCAACCGGCCAGGGAGAAACACACGGAACA 437
||||||||||||||| ||||| ||||| ||||||||| | || | | | ||||||
Sbjct 358 ATGTCTGATACCAAAATCTTGCTCACGAACCCAACCGGTC----AG--A-A-A-GGAACA 408
Query 438 CGCATGCTTCTTTCGACCTTCCTAATTCTGCTAGGAACAATCTCCCCGGGAAACGTCCCT 497
|||| |||||||||||||| ||| || |||| |||||||| || ||||||||||
Sbjct 409 TACATGAATCTTTCGACCTTCC---TTCCGCAAGGATTAATCTCCCAGGCAAACGTCCCT 465
Query 498 CGCCTCCTCGAGCCGAGCGATAACAGCATCG-GCTTTATAGAT-AGCAGTCTCCAAATGG 555
||||| ||||||| || | |||| |||||| | | ||| || | ||||||| | ||||
Sbjct 466 CGCCTTCTCGAGCGGAACTTTAACTGCATCGAAC-TCATAAATCA-CAGTCTCTACATGG 523
Query 556 ATATCTGCAGTAATTCCGAGCATTGTAACCATCTCAGTTGCAGGGCTCTAAGGGCTGCGA 615
||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 524 ATATCTGCAGTTATTCCGAGCATTGTAACCATCTCAATTGCAGGGCTCTAAAGGCGGCGA 583
Query 616 CCAAATCGTACGCG-CGGTTCAGCAAGTGTCCGTCGGGAGTGGCGCTGATAGATCGCCGA 674
||| |||||||||| ||| | ||||||||||||||||||||||||||||| |||| ||||
Sbjct 584 CCATATCGTACGCGCCGGAT-AGCAAGTGTCCGTCGGGAGTGGCGCTGATTGATCACCGA 642
Query 675 GGGACAGTGTACAGTGGATGGTTCATGGAAAGTGTGGCGCATAACCCTAGTTTGGGGCCA 734
|| | ||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 643 GGTAAAGTGTACAGTGGAGGGTACATGGAAAGTGTGGCGCATAACACTAGTTTGGGGCCA 702
Query 735 GTACAAGCCGCACTGGTTGACTTCGTGGTTAATGGCGACGGCCAAGAGTTCAAGGAGATC 794
|||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||
Sbjct 703 GTACAAGCCGCACTGGTTGACTTCGTGGCTAATGGCGATGGCCAAGAGTTCAAAAATATC 762
Query 795 GTCGAAGCGGTGCTGGTGGAGAAGAGAGGTGCGGTGTTGAGTCAAGAGGACACTGCGAGG 854
||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||
Sbjct 763 GTCGAAGCGGTGCTGGTGGAGAAGAAATGTGGGGTGTTGAGTCAAGAGGCCACTGCGAGG 822
Query 855 ATGATTTTAGAGAAGATAGCCGACCCCGACTGCGTTTTCAGGGTCTTACATTGCGAATAT 914
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 823 ATGATTTTAGAGAAGATAGCCGACCCCGACTGCATTTTCAGGGTCTTACATTGC-AA-AT 880
Query 915 AATTAAGTCCTCACTCTAATGTG 937
|| |||||||| ||||||||
Sbjct 881 AA----GTCCTCACACTAATGTG 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45964244505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5