BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952399 Length=940 Score E Sequences producing significant alignments: (Bits) Value AT4G29570.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1051 0.0 > AT4G29570.1 | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr4:14507398-14508482 FORWARD LENGTH=1085 Length=1085 Score = 1051 bits (569), Expect = 0.0 Identities = 810/923 (88%), Gaps = 30/923 (3%) Strand=Plus/Plus Query 21 ATGGCACAGCCCTTTCGCTTCATGCTCAATCAAACAGAAACAGAATCCTACGGCGCTTTC 80 |||||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1 ATGGCACAGCCCATGCGCTTCATGCTCAATCATATAGAAACAGAATCCTACGGCGCTTTC 60 Query 81 ATCCCC-CGAAACCTTAGGCCGCTGATCGATCGTGCCATTCCACACGCTCGAGCTCAAAT 139 | |||| | ||||||||| ||||||||| ||||||| ||||||||| ||||||||||||| Sbjct 61 A-CCCCTCAAAACCTTAGTCCGCTGATCAATCGTGCGATTCCACACACTCGAGCTCAAAT 119 Query 140 CTCGGGATCACCCGTCGTAGCCATCGGCCTTGCATCATCAGGTCAGACCTACTTTGGCGT 199 ||| |||||||| ||||||||| |||||| | ||||||||||| ||||| ||||||||| Sbjct 120 CTCCGGATCACCTGTCGTAGCCGTCGGCCGAGGATCATCAGGTCGGACCTTCTTTGGCGT 179 Query 200 CAATGTGGAATTACCAGGTCTGCCTCCTAACTACTCCATACACGCCGAACAGTTCCTTGT 259 |||||||||||||||||||||||||| | || ||||||| |||||||||||||||||| | Sbjct 180 CAATGTGGAATTACCAGGTCTGCCTCTTGACCACTCCATCCACGCCGAACAGTTCCTTCT 239 Query 260 CGCCAACTTCGCCCTCCACTTCGAGCTAAAACTC-ATAGGCTTAGCCATCTCCCCTAACG 318 ||||||| |||||||||||||||||| ||||||| | | || ||||||||||| |||||| Sbjct 240 CGCCAACCTCGCCCTCCACTTCGAGCAAAAACTCGA-ATGCATAGCCATCTCCACTAACG 298 Query 319 GCTACTACTTCAAGGCGCCATGCGGCCACTGCTGCCAATTTCTTCGGGAAATCAGCA-AT 377 ||||||||||| ||| |||||||||||||||||||||||| |||| ||||||| | || Sbjct 299 GCTACTACTTCCAGGAGCCATGCGGCCACTGCTGCCAATTACTTCATAAAATCAG-AGAT 357 Query 378 ATGTCTGATACCAAAGTCTTGATCACGGGCCCAACCGGCCAGGGAGAAACACACGGAACA 437 ||||||||||||||| ||||| ||||| ||||||||| | || | | | |||||| Sbjct 358 ATGTCTGATACCAAAATCTTGCTCACGAACCCAACCGGTC----AG--A-A-A-GGAACA 408 Query 438 CGCATGCTTCTTTCGACCTTCCTAATTCTGCTAGGAACAATCTCCCCGGGAAACGTCCCT 497 |||| |||||||||||||| ||| || |||| |||||||| || |||||||||| Sbjct 409 TACATGAATCTTTCGACCTTCC---TTCCGCAAGGATTAATCTCCCAGGCAAACGTCCCT 465 Query 498 CGCCTCCTCGAGCCGAGCGATAACAGCATCG-GCTTTATAGAT-AGCAGTCTCCAAATGG 555 ||||| ||||||| || | |||| |||||| | | ||| || | ||||||| | |||| Sbjct 466 CGCCTTCTCGAGCGGAACTTTAACTGCATCGAAC-TCATAAATCA-CAGTCTCTACATGG 523 Query 556 ATATCTGCAGTAATTCCGAGCATTGTAACCATCTCAGTTGCAGGGCTCTAAGGGCTGCGA 615 ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||| Sbjct 524 ATATCTGCAGTTATTCCGAGCATTGTAACCATCTCAATTGCAGGGCTCTAAAGGCGGCGA 583 Query 616 CCAAATCGTACGCG-CGGTTCAGCAAGTGTCCGTCGGGAGTGGCGCTGATAGATCGCCGA 674 ||| |||||||||| ||| | ||||||||||||||||||||||||||||| |||| |||| Sbjct 584 CCATATCGTACGCGCCGGAT-AGCAAGTGTCCGTCGGGAGTGGCGCTGATTGATCACCGA 642 Query 675 GGGACAGTGTACAGTGGATGGTTCATGGAAAGTGTGGCGCATAACCCTAGTTTGGGGCCA 734 || | ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| Sbjct 643 GGTAAAGTGTACAGTGGAGGGTACATGGAAAGTGTGGCGCATAACACTAGTTTGGGGCCA 702 Query 735 GTACAAGCCGCACTGGTTGACTTCGTGGTTAATGGCGACGGCCAAGAGTTCAAGGAGATC 794 |||||||||||||||||||||||||||| ||||||||| |||||||||||||| | ||| Sbjct 703 GTACAAGCCGCACTGGTTGACTTCGTGGCTAATGGCGATGGCCAAGAGTTCAAAAATATC 762 Query 795 GTCGAAGCGGTGCTGGTGGAGAAGAGAGGTGCGGTGTTGAGTCAAGAGGACACTGCGAGG 854 ||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||||||| Sbjct 763 GTCGAAGCGGTGCTGGTGGAGAAGAAATGTGGGGTGTTGAGTCAAGAGGCCACTGCGAGG 822 Query 855 ATGATTTTAGAGAAGATAGCCGACCCCGACTGCGTTTTCAGGGTCTTACATTGCGAATAT 914 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || Sbjct 823 ATGATTTTAGAGAAGATAGCCGACCCCGACTGCATTTTCAGGGTCTTACATTGC-AA-AT 880 Query 915 AATTAAGTCCTCACTCTAATGTG 937 || |||||||| |||||||| Sbjct 881 AA----GTCCTCACACTAATGTG 899 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45964244505 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5