BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952400
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29560.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Fanconi A... 268 1e-71
> AT4G29560.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Fanconi
Anaemia group E protein, C-terminal (InterPro:IPR021025); Has
41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria
- 0; Metazoa - 10; Fungi - 0; Plants - 27; Viruses -
0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:14503873-14506014
REVERSE LENGTH=2045
Length=2045
Score = 268 bits (145), Expect = 1e-71
Identities = 183/201 (91%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 8 AGAGCGAAGGACAAAATGGAGGAGTGGATTCCACTGTTGGACATTTTCTTGAAGAGTCCA 67
|||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 AGAGGGAAGGACAAAATGGAGGAGTGGATTCCACTATTCGACATTTTCTTGAAGAGTCCA 60
Query 68 TCTCCGGAGACCGAGGCTTCGCTGTGGCTAGACCAGGCTTCGAA-CTCTTCTTCTTCCTC 126
||||||||| | ||||||||||||||| |||||||||||||||| || || |||||||||
Sbjct 61 TCTCCGGAGGCTGAGGCTTCGCTGTGGTTAGACCAGGCTTCGAACCT-TTTTTCTTCCTC 119
Query 127 CTCCTCTGCGGCGGCGCCGATCAACCGGAGCtttttttttCTCATCCCCGAAGAAACAAT 186
|||||||||||||||||||||||||||||||| ||| || |||| | |||||||||||
Sbjct 120 CTCCTCTGCGGCGGCGCCGATCAACCGGAGCTCGTTTGTT-TCATTGCTGAAGAAACAAT 178
Query 187 GTGACCAGAATTCATCTCCGG 207
| || ||||||||||||||||
Sbjct 179 GCGATCAGAATTCATCTCCGG 199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9406352637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5