BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952402
Length=454
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04260.1 | Symbols: PTAC3 | plastid transcriptionally active... 741 0.0
> AT3G04260.1 | Symbols: PTAC3 | plastid transcriptionally active
3 | chr3:1123023-1127515 REVERSE LENGTH=2941
Length=2941
Score = 741 bits (401), Expect = 0.0
Identities = 436/453 (96%), Gaps = 2/453 (0%)
Strand=Plus/Plus
Query 1 GCAGACGTTTGGGGTTGGACATGGGAAAAGGA-TTTAAGAACAGAACTCCTAGGAAATGG 59
|||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||
Sbjct 2299 GCAGACGTTTGGGGTTGGACATGGGAGAAGGATTTTAAGAACAAAACTCCAAGGAAATGG 2358
Query 60 TCACAAGAGTGGGAAGTCGAGTTGGCAATTGTGCTAATGACAAAGGTGATTGAACTGGGT 119
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 2359 TCACAAGAGTGGGAAGTCGAGTTGGCAATTGTGCTCATGACAAAGGTGATTGAATTGGGT 2418
Query 120 GGAATTCCAACAATTGGTGATTGTGCAGTGATATTACGAGCTGCTTTAAGAGCTCCCATG 179
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2419 GGAATTCCAACGATTGGTGATTGTGCAGTGATATTACGAGCTGCTTTAAGAGCTCCCATG 2478
Query 180 CCTTCAGCCTTCTTGAAGATCTTGCAGACGACACACAGTCTTGGCTACTCTTTTGGCAGC 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2479 CCTTCAGCCTTCTTGAAGATCTTGCAGACGACACACAGTCTTGGCTACTCATTTGGCAGC 2538
Query 240 CCATTGTACGATGAGATCATCACATTGTGTTTAGACATTGGAGAACTTGATGCAGCCATT 299
|| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2539 CCGTTGTACGATGAGATCATCACATTGTGTTTGGACCTTGGAGAACTTGATGCAGCCATC 2598
Query 300 GCCATAGTTGCAGATATGGAAACCACAGGGATCACTGTCCCTGATCAAACCCTTGACAAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2599 GCCATAGTTGCAGATATGGAAACCACAGGGATCACTGTCCCTGATCAAACCCTTGACAAG 2658
Query 360 GTCATATCTGCTAGACAATCCAATGAGAATCCGCGGTCTGAGCCTGAAGAGCCACCATCA 419
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||
Sbjct 2659 GTCATATCTGCTAGACAATCTAATGAGAGTCCGCGGTCTGAGCCTGAAGAGCCAGCATCA 2718
Query 420 ACAGTAAGCTCTTAGTTATCATATCTTCCTTCT 452
||||||||||||||||||||||||| || ||||
Sbjct 2719 ACAGTAAGCTCTTAGTTATCATATCCTC-TTCT 2750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21615132070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5