BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952412

Length=260
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44970.1 | Symbols:  | Cytochrome P450 superfamily protein |...   159    9e-39


> AT3G44970.1 | Symbols:  | Cytochrome P450 superfamily protein 
| chr3:16432443-16434848 FORWARD LENGTH=1440
Length=1440

 Score =  159 bits (86),  Expect = 9e-39
 Identities = 161/195 (83%), Gaps = 13/195 (7%)
 Strand=Plus/Plus

Query  48   TTG-GTCATAGCTTTAGTGGTTGTGAGGATCAGCCACTGGTTGTATCGATGGTCGAACAC  106
            ||| || |||| ||||||||||| |||| |  | || |||| ||| | |||||| || ||
Sbjct  27   TTGTGTTATAGTTTTAGTGGTTGCGAGGGTTGGTCATTGGTGGTACCAATGGTC-AA-AC  84

Query  107  TAAACCTAAGTGC-ATCGGCAAGTTACCTCCAGGATCAATGGGTTTCCCGATCATCGGAG  165
                ||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  85   ----CCTAAGT-CTAACGGCAAGTTACCTCCGGGATCAATGGGTTTCCCGATCATCGGAG  139

Query  166  AAACAATCCATTTCTTTAAGCCTTATGGATTCTACGAGAT-TCCACCCTTTCTCAAGAAG  224
            | ||| |  ||||||||||||||||||||||||||||||| ||| || | ||||||||| 
Sbjct  140  AGACATTAGATTTCTTTAAGCCTTATGGATTCTACGAGATCTCC-CCATATCTCAAGAAA  198

Query  225  A-GATTATTAAGGTA  238
            | |||  ||||||||
Sbjct  199  AAGATG-TTAAGGTA  212



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11863188764


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5