BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952422
Length=391
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75940.1 | Symbols: ATA27, BGLU20 | Glycosyl hydrolase super... 99.0 3e-20
AT2G44490.1 | Symbols: PEN2, BGLU26 | Glycosyl hydrolase superf... 67.6 8e-11
> AT1G75940.1 | Symbols: ATA27, BGLU20 | Glycosyl hydrolase superfamily
protein | chr1:28511168-28514284 FORWARD LENGTH=1878
Length=1878
Score = 99.0 bits (53), Expect = 3e-20
Identities = 168/222 (76%), Gaps = 13/222 (6%)
Strand=Plus/Plus
Query 138 TTTCCC-AAAGGCTTTC-TCTTTGGCACGGCCAGTGCTGCGTTTCAGGTTGAAGGAGCCG 195
|||||| ||||| |||| | ||||| || || | |||||| ||||||||||||||||| |
Sbjct 153 TTTCCCTAAAGG-TTTCATTTTTGGTACCGCAACTGCTGCTTTTCAGGTTGAAGGAGCTG 211
Query 196 TAGAA-GAAGCTTGTAGAGGACCGAGCGTGTGGGACATCTACTGTAGGAAATAT-GCA-T 252
|| || |||| |||||||| || ||| |||||||| | ||| | ||||| | ||
Sbjct 212 TA-AATGAAGGATGTAGAGGTCCAAGCATGTGGGACGTATACACCAAGAAAT-TCCCACA 269
Query 253 TCAGATG-CAGTGGCGATAACGGCGATGTGGCCACT-GATTTCTACCATCGTTACAAGGA 310
| | ||| | | | | || | ||| || | | | |||||||||||||||||||||||
Sbjct 270 T-AAATGTAATTATC-ACAATGCCGACGTTG-CTGTCGATTTCTACCATCGTTACAAGGA 326
Query 311 AGATATTAAATTAATGAAGAATTTGAACTCAGACGCCTTTAG 352
|||||| || || ||||| ||| ||||| | || | ||||||
Sbjct 327 AGATATCAAGTTGATGAAAAATCTGAACACTGATGGCTTTAG 368
> AT2G44490.1 | Symbols: PEN2, BGLU26 | Glycosyl hydrolase superfamily
protein | chr2:18364756-18367725 FORWARD LENGTH=2009
Length=2009
Score = 67.6 bits (36), Expect = 8e-11
Identities = 158/213 (74%), Gaps = 23/213 (11%)
Strand=Plus/Plus
Query 130 GAGCTAGTTTTCCCAAAGGCTTTCTCTTTGGCACGGC--CAGTGCTGCGTT-TCAGGT-T 185
||||||| ||||| ||||||||||||||||| || || || | || | || ||| ||
Sbjct 163 GAGCTAGCTTTCCAAAAGGCTTTCTCTTTGGAACTGCTTCA-T-CTTC-TTATCA-GTAC 218
Query 186 GAAGGAGCCGTAGAA-GAAGCTTG-TAGAGGACCGAGCGTGTGGGA-CATCTACTGTAGG 242
|||||||| || ||| |||| || ||||||| ||||||||||| ||| | || |
Sbjct 219 GAAGGAGCAGT-GAATGAAG-GTGCGAGAGGACAAAGCGTGTGGGATCAT-TTCTCCAAC 275
Query 243 AAATATGCAT-TCAG-ATGCAGTG--GCGA-TAACGGCGATGTGGCCACTGATTTCTACC 297
| | | | | ||| || ||||| | | |||| | || ||| |||||||||||
Sbjct 276 AGGT-TTCCTCACAGAAT-CAGTGATTCTAGCGACGGAAACGTTGCCGTTGATTTCTACC 333
Query 298 ATCGTTACAAGGAAGATATTAA-ATTAATGAAG 329
|||||||||||||||||||||| | |||||||
Sbjct 334 ATCGTTACAAGGAAGATATTAAGAG-AATGAAG 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18448263883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5