BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952423

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15351.1 | Symbols:  | unknown protein; Has 50 Blast hits to...   438    1e-122


> AT3G15351.1 | Symbols:  | unknown protein; Has 50 Blast hits 
to 50 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa 
- 7; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:5176059-5177648 FORWARD 
LENGTH=688
Length=688

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 271/288 (94%), Gaps = 0/288 (0%)
 Strand=Plus/Plus

Query  26   GATGGTGGAGAATGACAAGGAGAGGAATGTGAACCGAGAAGCTCTTACAGCACTTAGGAA  85
            |||||||||||||||||||||||||||||  |||||||| |||||||||||||| |||||
Sbjct  157  GATGGTGGAGAATGACAAGGAGAGGAATGCAAACCGAGAGGCTCTTACAGCACTAAGGAA  216

Query  86   GAGAGCTCGGACAACAAAGACTAGTATTCTTTCTCCATTCGATTCTATGATAAAGGATAT  145
            ||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||||||
Sbjct  217  GAGAGCTCGGACAACAAAGACTAGTGTTATGTCTCCATTTGATTCTATGATGAAGGATAT  276

Query  146  CCATGGGAGCTCAACCAAACCTTTGGTCCAGGAAGTTTGTTCGACTTGTGGATCCCATGA  205
            ||||||||||||||| |||||||||||||| |||||||| || || ||||||||||||||
Sbjct  277  CCATGGGAGCTCAACGAAACCTTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGA  336

Query  206  CTCTAGTGAACCGACGTGGATGATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTT  265
            |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  337  CTCTAGTGAACCCACCTGGATGATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTT  396

Query  266  TCATGCTGTGCATACAATGCTAGAGAAAAATGAAGAGAAAATGGAGTT  313
            |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  397  TCATGCTGTGCATACAATGCTAGAGAAAGATGAAGAGAAAATGGAGTT  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5