BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952424
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09260.1 | Symbols: PYK10, PSR3.1, BGLU23, LEB | Glycosyl hy... 303 9e-82
> AT3G09260.1 | Symbols: PYK10, PSR3.1, BGLU23, LEB | Glycosyl
hydrolase superfamily protein | chr3:2840477-2843781 REVERSE
LENGTH=1806
Length=1806
Score = 303 bits (164), Expect = 9e-82
Identities = 435/560 (78%), Gaps = 42/560 (8%)
Strand=Plus/Plus
Query 47 ATGGGAGAAAGGAGAAAGGAGTGAG-CAAAGCTGGTGTCCAATTCTACCACGACCTCATC 105
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 416 ATGGGAGAAAGGAGAAAGGAGTGAGTC-AAGCTGGTGTGCAATTCTACCACGACCTCATC 474
Query 106 GACGAGCTTATCAAAAA-GGATCTTATTCCTCTT-GTGACTGTCTTCCACTGGGACAC-C 162
|||||||| || ||||| || | | | ||| || || ||||| || ||||||||||| |
Sbjct 475 GACGAGCTCATAAAAAATGG-TATAACTCCA-TTCGTTACTGTTTTTCACTGGGACACTC 532
Query 163 C-CAAGTGATTTAGAAGACGAATACGGTGGCTTCCTAAGCCAAAATATTGTAAAGGATTT 221
| |||| |||||||||| ||||| || ||||| ||||| ||| ||||| ||||||||
Sbjct 533 CACAAG--ATTTAGAAGATGAATATGGCGGCTTTTTAAGCGAAAGGATTGTGAAGGATTT 590
Query 222 CATG-GAATACGCAGAATTTGTGTTC-AACGAATTTGGTG-ACAAAGTAAAAAATTGGGT 278
| | || || ||||| ||||| ||| || |||| |||| | ||||| ||| ||||| |
Sbjct 591 CC-GAGAGTATGCAGATTTTGTTTTCCAA-GAATACGGTGGA-AAAGTGAAACATTGGAT 647
Query 279 CACTTTCAATGAGCCATGGGTCTTTAGTCGTGC-C-GGTTACGATG-AGGGAAAGAAAGC 335
||||||||||||||||||||| ||| ||| | | || || || | ||| ||| || ||
Sbjct 648 CACTTTCAATGAGCCATGGGT-TTTC-TCGCACGCTGGCTATGACGTAGGCAAA-AAGGC 704
Query 336 ACCAGGACGTTGCTCTAAGTACCAAAATG--AATTCTGTGAAGATGGACGATCAGGATAT 393
||| || ||||||||| ||| |||| || | | |||| ||||||||||||||
Sbjct 705 ACCTGGTCGTTGCTCTTCTTACGTCAATGCTAAAT--GCCAAGACGGACGATCAGGATAC 762
Query 394 GAAGCTTACCTCGTTAGC-CATAACCTACTTATATCTCATGCCGAAGCTGTTTATATTTT 452
|| |||||||| || | | || || || ||||| ||||| || ||||| ||| | | ||
Sbjct 763 GAGGCTTACCTTGTCA-CTCACAATCTCCTTATCTCTCACGCAGAAGCAGTTGA-AGCTT 820
Query 453 -CAG-AAAT---AAATACAA-AAAGGTGGGAAGATCGGAATTGCGCATAGCCCGGCTTGG 506
| | |||| ||| | ||||||||||||||||||||||| ||||| || ||||||
Sbjct 821 ACCGGAAATGCGAAA-AGTGTAAAGGTGGGAAGATCGGAATTGCACATAGTCCTGCTTGG 879
Query 507 TTCGA-GCCACATGCATGATTTTAATGACGCACAAGATGGTGCATCCATTGAACGTTCAC 565
||||| || ||||| | || ||| ||||||| ||||| ||||| || ||| |||
Sbjct 880 TTCGAAGC-ACATG-ACC-TTGC--TGATTCACAAGACGGTGCGTCCATCGACCGTGCAC 934
Query 566 TTGACTTTATGATGGGATGG 585
|||||||||| ||||||||
Sbjct 935 TTGACTTTATTTTGGGATGG 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5