BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952426
Length=215
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43200.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 281 1e-75
> AT2G43200.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr2:17958230-17960536
FORWARD LENGTH=1836
Length=1836
Score = 281 bits (152), Expect = 1e-75
Identities = 181/195 (93%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 1 TTGTTGATATACTCTTGGAGATGCAGAGGATTCTTAGACCAGAAGGCGCAGTTATAATAC 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1643 TTGTTGATATACTCTTGGAGATGCAGAGGATTCTTAGACCAGAAGGAGCAGTTATAATAC 1702
Query 61 GAGACCGTTTAGATGTTCTTATCAAAGTGAAAGCTATAACCAGTCAAATGAGATGGAATG 120
|||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||
Sbjct 1703 GAGACCGTTTTGATGTTCTTGTCAAAGTGAAAGCCATAACCAATCAAATGAGATGGAATG 1762
Query 121 GGACAGTTTATCCAGACGATAACAGTGGTTTT-GATCATGGAACAATACTAATTGTAGAT 179
||||| | |||||||| ||||| |||| |||| |||||||||||||||||||| ||||||
Sbjct 1763 GGACAATGTATCCAGAAGATAATAGTG-TTTTCGATCATGGAACAATACTAATCGTAGAT 1821
Query 180 AATTCAGTTAAATAA 194
|| ||| ||||||||
Sbjct 1822 AACTCAATTAAATAA 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9601140059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5