BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952435
Length=349
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 | chr... 411 3e-114
> AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 | chr5:24197998-24201364
REVERSE LENGTH=2182
Length=2182
Score = 411 bits (222), Expect = 3e-114
Identities = 263/282 (93%), Gaps = 6/282 (2%)
Strand=Plus/Plus
Query 13 TTCTAAAAATGTGTTTTAATAACAACGAAACTGGTGATGAAGTGAAAACCGAGAGGCAAG 72
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 389 TTCTAAAAATGTGTTTTAATAACATTGAAACTGGTGATGAAGTGGAAACCGAGAGGCAAG 448
Query 73 TGTTTGTTTCATCCGAAGAAGATGAATTTCGAGTTGAAGATACTCCTGGAGATGATGCCA 132
|||||| |||||| |||||||||||||||||||||||||||||| || ||| || |||
Sbjct 449 TGTTTGGTTCATCTGAAGAAGATGAATTTCGAGTTGAAGATACTGCT--AGA-AATACCA 505
Query 133 ACAATTTGATACAGATTTCTCAACAACAACAGCAACCGCTAGCTCCTGTTGTTAAGTGGG 192
|||| || ||||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 506 ACAA--TG-TACAGATTTCTCAACAACAGCAGCAACCGCTAGCTCATGTTGTGAAGTGGG 562
Query 193 AGAGGTATCTCCCGGTTAGATCGCTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACAC 252
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AGAGGTATCTCCCAGTTAGATCGCTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACAC 622
Query 253 GCCATATTGTTACTGCCCTTTTGAAGAATTGCAGCTATGAAG 294
|||||||||||||||||||||| |||||||||||||||||||
Sbjct 623 GCCATATTGTTACTGCCCTTTTAAAGAATTGCAGCTATGAAG 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16337018425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5