BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952436
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60110.1 | Symbols: APUM18, PUM18 | pumilio 18 | chr5:242019... 1520 0.0
AT5G60180.1 | Symbols: APUM19, PUM19 | pumilio 19 | chr5:242330... 1487 0.0
AT1G21620.1 | Symbols: APUM20, PUM20 | pumilio 20 | chr1:757912... 196 3e-49
> AT5G60110.1 | Symbols: APUM18, PUM18 | pumilio 18 | chr5:24201954-24202937
FORWARD LENGTH=984
Length=984
Score = 1520 bits (823), Expect = 0.0
Identities = 935/989 (95%), Gaps = 7/989 (1%)
Strand=Plus/Plus
Query 21 ATGGCAGTCGCCGATAATTCCTTTTCACTGTCGACCATGTTCAATGCTTTACCATACTCT 80
||||||||||| |||||| |||||||| |||||||||||||||||||||||||| || ||
Sbjct 1 ATGGCAGTCGCTGATAATCCCTTTTCAATGTCGACCATGTTCAATGCTTTACCAAACCCT 60
Query 81 AAAGGAATCTCCGGTTTCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 140
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGGAATCTCCGGTTCCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 120
Query 141 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGAAGGTGTGTCTTACTTTAAAG-G 199
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 121 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGATGGTGTGTCTTACTTTAAAGAG 180
Query 200 CATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCTTCGTTGCTGACGTCAGA 259
||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| ||
Sbjct 181 -ATGATCTCAAATTCAGACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGA 239
Query 260 CTCCGATTACTTCATGGCGATCGTCACAAACAAGTACGGCTCGAGACGCGTGCAGAAGCT 319
|||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 240 CTCCGATTACTTCATGTCGATCGTCACAACCAAGTTCGGCTCGAGACGCGTGCAGAAGCT 299
Query 320 CCTCGGCAAATCAGATGATGCCGACGCGCT-CTTCTGTGCCGCTATCTTGCGCCGCTTCC 378
|||||||||||||||||| | ||||| || |||||||||||||||||||||||||||||
Sbjct 300 CCTCGGCAAATCAGATGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCGCCGCTTCC 358
Query 379 TCCACATCACGACCGACAAATACGCAACCTACGTGACGATACGAGCCATGGTCGTTTTCG 438
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 TCCACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGCCATGGTCGTTTTCG 418
Query 439 ACAAGGAGATGAAGAAGGCAATGTACGAGCACATTCTCTACCATGCTCTCGACCTAGCGT 498
|||||| |||||| |||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 419 ACAAGGTGATGAAAAAGGCATTGTACGAGCGCATTCTCTACCACGCTCTCGACCTAGCGT 478
Query 499 GTGATCAACACGGCTGCATCGCGCTCAACGATATCATAACCGACTCTGACGATCCTTACT 558
|||| || |||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 479 GTGACCAGCACGGCTGCATCGCGCTCAATGATATCATAACCGACGCTGACGATCCTTACT 538
Query 559 ACAGAGATCAGCTACTAGACTTGGTCGCATCCAACGCTCTCTGTCTAAGCAACGATGCTT 618
||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct 539 ACAGAGATCAGCTACTAGAATTGGTCGCATCCAACGCTCTCCGGCTAAGCAACGATGCTT 598
Query 619 CAGGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTTGCGTTGCACTCACAACA 678
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 599 CAGGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTCGCGTTGCATTCACAACA 658
Query 679 TCGCGGTTAATCTTTATGGCCATTGCATTGATCTCTCGTTTAAGAAGTATGGAAGCTACA 738
|||| |||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 659 TCGCCGTTAATCTTTATGGTCAGTGCATTGAGCTATCGTTTAAGAAGTATGGAAGCTACA 718
Query 739 TCGTGGAGAAGCTTTTGGAGGCGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGG 798
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCGTGGAGAAGCTTTTGGAGGTGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGG 778
Query 799 ATTGCGATGGAGACACGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGG 858
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTGCGATGGAGACAGGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGG 838
Query 859 TCAAGGCACTGAGATTCACCAAGGCGATGTCTAAGATTGATCTGTTTTGGGGTTTGGTGC 918
||||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 839 TCAAGGCTCTGAGATTCACCAAG---ATGTCTAGGATGGATCTGTTTTGGGGTTTGGTGC 895
Query 919 AGAAGCTCATGCCTTTTCTCCATCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAGCA 978
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 896 AGAAGCTCATGCCTTTTATCCGTCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAACA 955
Query 979 TCTTGGACTCATTTAGGCTTCGTTGCTGA 1007
|||||||||||||||||||||||||||||
Sbjct 956 TCTTGGACTCATTTAGGCTTCGTTGCTGA 984
> AT5G60180.1 | Symbols: APUM19, PUM19 | pumilio 19 | chr5:24233024-24234007
REVERSE LENGTH=984
Length=984
Score = 1487 bits (805), Expect = 0.0
Identities = 929/989 (94%), Gaps = 7/989 (1%)
Strand=Plus/Plus
Query 21 ATGGCAGTCGCCGATAATTCCTTTTCACTGTCGACCATGTTCAATGCTTTACCATACTCT 80
||||||||| |||||||| |||||||| |||||||||||||||||||||||||| || ||
Sbjct 1 ATGGCAGTCTCCGATAATACCTTTTCAATGTCGACCATGTTCAATGCTTTACCAAACCCT 60
Query 81 AAAGGAATCTCCGGTTTCATTCCTCCTCCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 140
| || || |||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ACAGAAACCTCCGGTTACATTCCTCCTTCTGGATTCGCCCCACGCGCCTCCGCCACGCCC 120
Query 141 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGAAGGTGTGTCTTACTTTAAAG-G 199
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 121 TTGCACGCAGCTCTGTTCAACCTAATGACTGACGGCGATGGTGTGTCTTACTTTAAAGAG 180
Query 200 CATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCTTCGTTGCTGACGTCAGA 259
||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||
Sbjct 181 -ATGATCTCAAAGTCAGACAAAACAGAGCTTCAGAGGATGGCCTCGTTGCTTACGTCTGA 239
Query 260 CTCCGATTACTTCATGGCGATCGTCACAAACAAGTACGGCTCGAGACGCGTGCAGAAGCT 319
|||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 240 CTCCGATTACTTCATGTCGATCGTCACAACCAAGTTCGGCTCGAGACGCGTGCAGAAGCT 299
Query 320 CCTCGGCAAATCAGATGATGCCGACGCGCT-CTTCTGTGCCGCTATCTTGCGCCGCTTCC 378
|||||||||||||||||| | ||||| || |||||||||||||||||||||||||||||
Sbjct 300 CCTCGGCAAATCAGATGACGTGGACGC-CTTCTTCTGTGCCGCTATCTTGCGCCGCTTCC 358
Query 379 TCCACATCACGACCGACAAATACGCAACCTACGTGACGATACGAGCCATGGTCGTTTTCG 438
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 TCCACATCACGACCGACAAATACGCATCCTACGTGACGATACGAGCCATGGTCGTTTTCG 418
Query 439 ACAAGGAGATGAAGAAGGCAATGTACGAGCACATTCTCTACCATGCTCTCGACCTAGCGT 498
|||||| |||||| |||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 419 ACAAGGTGATGAAAAAGGCATTGTACGAGCGCATTCTCTACCACGCTCTCGACCTAGCGT 478
Query 499 GTGATCAACACGGCTGCATCGCGCTCAACGATATCATAACCGACTCTGACGATCCTTACT 558
|||| || |||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 479 GTGACCAGCACGGCTGCATCGCGCTCAATGATATCATAACCGACGCTGACGATCCTTACT 538
Query 559 ACAGAGATCAGCTACTAGACTTGGTCGCATCCAACGCTCTCTGTCTAAGCAACGATGCTT 618
||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||
Sbjct 539 ACAGAGATCAGCTACTAGAATTGGTCGTATCCAACGCTCTCCGGCTAAGCAACGATGCTT 598
Query 619 CAGGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTTGCGTTGCACTCACAACA 678
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 599 CAGGGAACTTTGTGGTCCAACATGTGCTTACACTGTATGACTCGCGTTGCATTCACAACA 658
Query 679 TCGCGGTTAATCTTTATGGCCATTGCATTGATCTCTCGTTTAAGAAGTATGGAAGCTACA 738
|||| |||||||||||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 659 TCGCCGTTAATCTTTATGGTCAGTGCATTGAGCTATCGTTTAAGAAGTATGGAAGCTACA 718
Query 739 TCGTGGAGAAGCTTTTGGAGGCGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGG 798
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCGTGGAGAAGCTTTTGGAGGTGGAGGAGTCAATGGTTGTGGTGGTTGTGGAGCTTTTGG 778
Query 799 ATTGCGATGGAGACACGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGG 858
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTGCGATGGAGACAGGTTGATGAGGCTGGCGAGGAATGAGTTTGGGAATTTCGTGGTGG 838
Query 859 TCAAGGCACTGAGATTCACCAAGGCGATGTCTAAGATTGATCTGTTTTGGGGTTTGGTGC 918
||||||||||||||||||| |||| |||| | ||| ||||||||||||||||||||||
Sbjct 839 TCAAGGCACTGAGATTCACAAAGGAGATG---AGGATGGATCTGTTTTGGGGTTTGGTGC 895
Query 919 AGAAGCTCATGCCTTTTCTCCATCTCTTGCGTAGATCTCACGGAAGCAACATTGCAAGCA 978
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 896 AGAAGCTCATGCCTTTTATCCATCTCTTGCGTAGATCTCACGGAAACAACATTGCAAACA 955
Query 979 TCTTGGACTCATTTAGGCTTCGTTGCTGA 1007
|||||||| ||||||||||||||||||||
Sbjct 956 TCTTGGACACATTTAGGCTTCGTTGCTGA 984
> AT1G21620.1 | Symbols: APUM20, PUM20 | pumilio 20 | chr1:7579129-7580171
FORWARD LENGTH=927
Length=927
Score = 196 bits (106), Expect = 3e-49
Identities = 247/315 (78%), Gaps = 10/315 (3%)
Strand=Plus/Plus
Query 201 ATGATCTCAAAGTCAGACAAAACAGTGCTTCAGAGGATGGCTTCGTTGCTGACGTCAGAC 260
|||||||| |||| |||| ||| | |||||| | |||||| || |||||||| |||||
Sbjct 211 ATGATCTCGAAGTTAGACCAAAGAAAGCTTCAAACGATGGCGTCATTGCTGACATCAGA- 269
Query 261 T-CCGATTACTTCATGGCGATCGTC-ACAAACAAGTACGGCTCGAGACGCGTGCAGAAGC 318
| ||||||||||| || ||||| | | ||||| | ||||||| | |||| | ||||| |
Sbjct 270 TCCCGATTACTTCTTGATGATCG-CAAGAAACATGAACGGCTCCAAACGCATTCAGAAAC 328
Query 319 TCCTCGGCAAATCAGATGATGCCGACGCGCTCTTCTG-TGCCGCTATCTTGCGCCGCTTC 377
| ||||| ||| ||||||| | ||||| | ||| | |||||||||||||||||||||
Sbjct 329 TTCTCGGAAAAACAGATGACGTGGACGCTTTATTC-GCCGCCGCTATCTTGCGCCGCTTC 387
Query 378 CTCCACATCA-CGACCGACAAATACGCAACCTACGTGACGATACGAGCCATGGTC-GTTT 435
|||||||||| | |||||||| ||||| | |||||| || ||| | ||| | ||||
Sbjct 388 CTCCACATCATC-ACCGACAAGTACGCGTCGTACGTGGTGAGACGGGGGATGA-CAGTTT 445
Query 436 TCGACAAGGAGATGAAGAAGGCAATGTACGAGCACATTCTCTACCATGCTCTCGACCTAG 495
|||| ||| ||| ||| || ||||||||||||||||||||| || | || | || |||
Sbjct 446 TCGATAAGAAGAAGAAAAAAGCAATGTACGAGCACATTCTCCACTACGCGAGCCACATAG 505
Query 496 CGTGTGATCAACACG 510
|| ||||| ||||||
Sbjct 506 CGCGTGATAAACACG 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5