BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952437
Length=361
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta | c... 152 2e-36
ATCG01220.1 | Symbols: TRNV.3 | tRNA-Val | chrC:137869-137940 R... 106 2e-22
ATCG00910.1 | Symbols: TRNV.2 | tRNA-Val | chrC:100709-100780 F... 106 2e-22
ATCG01280.1 | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA ty... 102 2e-21
ATCG00860.1 | Symbols: YCF2.1 | Chloroplast Ycf2;ATPase, AAA ty... 102 2e-21
ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein ... 95.3 3e-19
ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribos... 80.5 1e-14
ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribos... 80.5 1e-14
> ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta |
chrC:52660-54156 REVERSE LENGTH=1497
Length=1497
Score = 152 bits (82), Expect = 2e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 40 ATCCAGAGGTTTCGATACGTGaaaaaaaaaaCCTGGGACGTATCGCTCAAATCATTGGTC 99
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 26 ATCCAGAGGTTTCGATACGTGAAAAAAAAAACCTGGGACGTATCGCCCAAATCATTGGTC 85
Query 100 CGGTACTGGATGTAGCCTTTCCCCCGGG 127
||||||||||||||||||| ||||||||
Sbjct 86 CGGTACTGGATGTAGCCTTCCCCCCGGG 113
> ATCG01220.1 | Symbols: TRNV.3 | tRNA-Val | chrC:137869-137940
REVERSE LENGTH=72
Length=72
Score = 106 bits (57), Expect = 2e-22
Identities = 57/57 (100%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 125 GGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAG 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAG 58
> ATCG00910.1 | Symbols: TRNV.2 | tRNA-Val | chrC:100709-100780
FORWARD LENGTH=72
Length=72
Score = 106 bits (57), Expect = 2e-22
Identities = 57/57 (100%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 125 GGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAG 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAG 58
> ATCG01280.1 | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA
type, core | chrC:145291-152175 REVERSE LENGTH=6885
Length=6885
Score = 102 bits (55), Expect = 2e-21
Identities = 55/55 (100%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 224 GAAAGATACGATCAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGG 278
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2319 GAAAGATACGATCAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGG 2373
> ATCG00860.1 | Symbols: YCF2.1 | Chloroplast Ycf2;ATPase, AAA
type, core | chrC:86474-93358 FORWARD LENGTH=6885
Length=6885
Score = 102 bits (55), Expect = 2e-21
Identities = 55/55 (100%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 224 GAAAGATACGATCAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGG 278
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2319 GAAAGATACGATCAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGG 2373
> ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein
| chrC:39605-41857 REVERSE LENGTH=2253
Length=2253
Score = 95.3 bits (51), Expect = 3e-19
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Minus
Query 279 GCTACTTTGCCACCCACTGCTACTAACTCACCGCCTCCCCAAGTCAAACTGGTG 332
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1559 GCTACTTTGCCACCCACTGCTACTAACTCACCGCCCCCCCAAGTCAAACTGGTG 1506
> ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribosomal
RNA | chrC:101012-102502 FORWARD LENGTH=1491
Length=1491
Score = 80.5 bits (43), Expect = 1e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 182 TAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCG 224
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCG 779
> ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribosomal
RNA | chrC:136147-137637 REVERSE LENGTH=1491
Length=1491
Score = 80.5 bits (43), Expect = 1e-14
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 182 TAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCG 224
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCG 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16940231413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5