BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952437 Length=361 Score E Sequences producing significant alignments: (Bits) Value ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta | c... 152 2e-36 ATCG01220.1 | Symbols: TRNV.3 | tRNA-Val | chrC:137869-137940 R... 106 2e-22 ATCG00910.1 | Symbols: TRNV.2 | tRNA-Val | chrC:100709-100780 F... 106 2e-22 ATCG01280.1 | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA ty... 102 2e-21 ATCG00860.1 | Symbols: YCF2.1 | Chloroplast Ycf2;ATPase, AAA ty... 102 2e-21 ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein ... 95.3 3e-19 ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribos... 80.5 1e-14 ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribos... 80.5 1e-14 > ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta | chrC:52660-54156 REVERSE LENGTH=1497 Length=1497 Score = 152 bits (82), Expect = 2e-36 Identities = 86/88 (98%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40 ATCCAGAGGTTTCGATACGTGaaaaaaaaaaCCTGGGACGTATCGCTCAAATCATTGGTC 99 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 26 ATCCAGAGGTTTCGATACGTGAAAAAAAAAACCTGGGACGTATCGCCCAAATCATTGGTC 85 Query 100 CGGTACTGGATGTAGCCTTTCCCCCGGG 127 ||||||||||||||||||| |||||||| Sbjct 86 CGGTACTGGATGTAGCCTTCCCCCCGGG 113 > ATCG01220.1 | Symbols: TRNV.3 | tRNA-Val | chrC:137869-137940 REVERSE LENGTH=72 Length=72 Score = 106 bits (57), Expect = 2e-22 Identities = 57/57 (100%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 125 GGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAG 181 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 GGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAG 58 > ATCG00910.1 | Symbols: TRNV.2 | tRNA-Val | chrC:100709-100780 FORWARD LENGTH=72 Length=72 Score = 106 bits (57), Expect = 2e-22 Identities = 57/57 (100%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 125 GGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAG 181 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 GGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAG 58 > ATCG01280.1 | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=6885 Length=6885 Score = 102 bits (55), Expect = 2e-21 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 224 GAAAGATACGATCAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGG 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2319 GAAAGATACGATCAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGG 2373 > ATCG00860.1 | Symbols: YCF2.1 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:86474-93358 FORWARD LENGTH=6885 Length=6885 Score = 102 bits (55), Expect = 2e-21 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 224 GAAAGATACGATCAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGG 278 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2319 GAAAGATACGATCAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGG 2373 > ATCG00350.1 | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=2253 Length=2253 Score = 95.3 bits (51), Expect = 3e-19 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 279 GCTACTTTGCCACCCACTGCTACTAACTCACCGCCTCCCCAAGTCAAACTGGTG 332 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1559 GCTACTTTGCCACCCACTGCTACTAACTCACCGCCCCCCCAAGTCAAACTGGTG 1506 > ATCG00920.1 | Symbols: RRN16S.1 | chloroplast-encoded 16S ribosomal RNA | chrC:101012-102502 FORWARD LENGTH=1491 Length=1491 Score = 80.5 bits (43), Expect = 1e-14 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 182 TAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCG 224 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 TAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCG 779 > ATCG01210.1 | Symbols: RRN16S.2 | chloroplast-encoded 16S ribosomal RNA | chrC:136147-137637 REVERSE LENGTH=1491 Length=1491 Score = 80.5 bits (43), Expect = 1e-14 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 182 TAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCG 224 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 TAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCG 779 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16940231413 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5