BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952442
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53390.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 1469 0.0
> AT5G53390.1 | Symbols: | O-acyltransferase (WSD1-like) family
protein | chr5:21656734-21659262 REVERSE LENGTH=1733
Length=1733
Score = 1469 bits (795), Expect = 0.0
Identities = 913/970 (94%), Gaps = 8/970 (1%)
Strand=Plus/Plus
Query 3 CCACTAATAGTTTAAAGAATGGGTGAAG-CGAAGAACAAGGCGAGGGAGACGGTGGAGGA 61
|||| ||||| | ||||||||||||||| | ||||| | ||| |||||||||||||||||
Sbjct 38 CCACAAATAGGTCAAAGAATGGGTGAAGAC-AAGAAGACGGCAAGGGAGACGGTGGAGGA 96
Query 62 GGAGCCACTCAGCCCATGTTCACGGCTGTTTAATTCGCCGGATTTTAACTGTGCGATAAT 121
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 97 GGAACCACTTAGCCCATGTTCACGGCTGTTCAATTCGCCGGATTTTAACTGTGCAATAAT 156
Query 122 CGTGACAATGGGATCTAGAGTCAAAGGAGACACACCTGCCATCATCCACGGCCTTGAACA 181
||| ||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 157 CGTTACAATGGGATCTAAAGTTAAAGGAGACACACCAGCCATCATCCACGGCCTTGAACA 216
Query 182 CACCCTCGTAAACCACCCTCGCTTTTCTAGCATTTTAGAGATGAACAATGGTAAGAAAGG 241
|||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 217 CACCCTCGTAAACCACCCTCGCTTCTCTAGCATTTTAGAGATGAACAATGG---G-AA-- 270
Query 242 GAAACCGCGTTGGGTTCGGACAAAAGTTAAAGTAGAAGAGCATGTGATTGTTCCTGACAT 301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 271 GAAGCCGCGTTGGGTTCGGACAAAAGTTAAAGTAGAAGAGCATGTGATTGTTCCTGATGT 330
Query 302 AGATCCCGACATTGAAAATCCTGATCAGTATCTTGAAGACTATATCTCTAAGTTAACGAC 361
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 331 GGATCCCGACATTGAAAATCCGGATCAGTATCTTGAAGACTATATCTCTAAGTTAACGAC 390
Query 362 CATTCCTATGGATTTGTCTAAGCCATTATGGGAAATGCACTTACTAGGCCTCAAAACATC 421
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 391 CATTCCTATGGATTTGTCTAAACCATTATGGGAAATGCACTTACTAGGCGTCAAAACATC 450
Query 422 GAACGCTGAATCCTTTGCCATTCTCAAGATCCATCATTCTTTGGGTGATGGAATGTCTCT 481
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 451 GAACGCTGAATCCTATGCTATTCTCAAGATCCATCATTCTTTGGGTGATGGAATGTCTCT 510
Query 482 CATGTCTCTTTTACTGGCTTGTACCCGCAAAACATCAGACCCCGAGGCTTTGCCTACCGT 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CATGTCTCTTTTACTGGCTTGTACCCGCAAAACATCAGACCCCGAGGCTTTGCCTACCGT 570
Query 542 TGCCGTTCAGAAAAAACGCTTTGGACCAAATTGCAACAGCGGTTTTTTCAACAAGATTTG 601
||| ||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 571 TGCGGTTCATAAAAAACGCTTTGGACCGAGCTGCAACAGCGGGTTTTTCAACAAGATTTG 630
Query 602 GTGGTTATTTGTAGGGCTCTGGTTCATCATAAGATTGCTATTCAACACTTTTGTTGATAT 661
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 631 GTGGTTATTTGTAGGGCTCTGGTTCATCCTAAGATTGCTATTCAACACTTTTGTTGATAT 690
Query 662 CTTAATGTTTGCTCTTACAATATTTTTCTTGAGGGATACGGAGACTCCTCTCTTGGCCAA 721
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 691 CTTAATGTTTGCTCTTACAATATTTGTCTTGAGGGATACGGAGACTCCTCTCTTGGCCAA 750
Query 722 ACCCGGTAGTGAACTTAACCCTAAGAGGTTCATCCACCGGATTATCAGCTTTGACGATGT 781
||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct 751 ACCCGGTAGTGAACTTATCCCTAAGAGGTTCGTCCACCGGATTATCAGTTTTGACGATGT 810
Query 782 TAAGCTGGTGAAAAATGCAATGAAAATGACGGTAAACGATGTTCTCCTTGGAGTAACCCA 841
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 811 TAAGCTGGTGAAAAACGCAATGAAAATGACGGTGAACGATGTTCTTCTTGGAGTAACGCA 870
Query 842 AGCCGGGCTTTCACGGTATCTTAGTCGAAGATATGATCAAGAAGCAACACCAAAATCAAA 901
|||||| ||||| || || |||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 871 AGCCGGACTTTCGCGTTACCTTAGTCGAAAATATGATCAAGAAGCAACACCGAAATCGAA 930
Query 902 AGAGTCGATGAGGAAAATCCGACTTCGTTCAGCCATTATGATTAACTTGAGACCAAACAC 961
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 931 AGAGTCCATGAGGAGAATCCGACTTCGTTCAGCCATTATGATTAACTTGAGACCAAACGC 990
Query 962 AGGAATTGAG 971
||||||||||
Sbjct 991 AGGAATTGAG 1000
Score = 281 bits (152), Expect = 8e-75
Identities = 165/171 (96%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 970 AGATGGGG-AATCTCTTCGGCTACATTCTCCTACCGTTCTCCGTTGGGCTAGAGGCCGAT 1028
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1037 AGATGGGGAAATCTCTTCGGCTACATTCTCCTACCGTTCTCCGTTGGGCTAGAGACCGAT 1096
Query 1029 CCTCTAGAATACGTGCGCCAAGCTAAAGCCACGATCGACCGCAAGAAA-ACTCTCTTGAA 1087
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1097 CCTCTAGAATACGTGCGCCAAGCTAAAGCCACGATTGACCGCAAGAAACACTCTCTAGAA 1156
Query 1088 GCCGTATTCTCCATGGCATTCTTTAAATTGATATTAAAAGTTCTTGGGCTC 1138
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1157 GCCGTATTCTCCATGGCATTCTTTAAATTGATACTAAAAGTTCTTGGGCTC 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5