BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952449
Length=757
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65670.1 | Symbols: IAA9 | indole-3-acetic acid inducible 9 ... 1040 0.0
> AT5G65670.1 | Symbols: IAA9 | indole-3-acetic acid inducible
9 | chr5:26253658-26256468 FORWARD LENGTH=1624
Length=1624
Score = 1040 bits (563), Expect = 0.0
Identities = 605/626 (97%), Gaps = 0/626 (0%)
Strand=Plus/Plus
Query 2 AAGAAACCTTAAGTATCCAATGTCTACGGAAGAGGAGCTACAGAGCAATGTCTCTGTGGC 61
|||||||||| ||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 255 AAGAAACCTTGAGTATCCAATGTCCCCGGAAGAGGAGCTACAGAGCAATGTATCGGTGGC 314
Query 62 AAGTTCTTCACCTACTAGCAATTGTATCTCCAGGAACACTCTAGGTGGACTTAAAGAGCA 121
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 315 TAGTTCTTCACCTACTAGCAATTGCATCTCCAGGAACACTCTAGGAGGACTTAAAGAGCA 374
Query 122 TAACTACTTGGGTCTCTCTGATTGTTCTTCTGTTGGAAGCTCCACTCTCTCGCTCCTTGC 181
|||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 375 TAACTACTTGGGTCTCTCTGATTGTTCTTCTGTTGGAAGCTCTACTCTCTCTCCCCTTGC 434
Query 182 TGAAGATGACAAAGCTACTATCAGCCTCAAGGCTACGGAGCTGACACTTGGTCTTCCTGG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TGAAGATGACAAAGCTACTATCAGCCTCAAGGCTACGGAGCTGACACTTGGTCTTCCTGG 494
Query 242 ATCACAATCTCCTGCGAGAGACACAGAGCTTAACCTTTTGAGCCCAGCAAAGCTCGATGA 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 495 ATCACAATCTCCTGCGAGAGACACAGAGCTTAACCTTTTGAGCCCAGCAAAGCTAGATGA 554
Query 302 GAAGCCATTCTTTCCTTTGCTTCCTTCTAAAGATGAGATATGCTCGTCCTCGCAAAAGAA 361
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 555 GAAGCCATTCTTTCCTTTGCTTCCTTCTAAAGATGAGATATGCTCCTCCTCGCAAAAGAA 614
Query 362 CAATGCATCCGGAAACAAAAGAGGCTTTTCTGATACAATGGATCAGTTTGCTGAAGCTAA 421
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 615 CAATGCATCGGGAAACAAAAGAGGCTTTTCTGACACAATGGATCAGTTTGCTGAAGCTAA 674
Query 422 AAGTTCAGTCTATACTGAGAAAAACTGGATGTTCCCTGAAGCTGCAGCCACCCAGTCTGT 481
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 675 AAGTTCAGTGTATACTGAGAAAAACTGGATGTTCCCTGAAGCAGCAGCCACCCAGTCTGT 734
Query 482 AACAAAGAAGGATGTGCCACAAAACATACCGAAAGGACAGTCGAGCACTACAAACAATAG 541
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 735 AACAAAGAAAGATGTGCCACAAAACATACCCAAAGGACAGTCTAGCACTACAAACAATAG 794
Query 542 CTCTAGTCCACCTGCAGCCAAGGCACAAATTGTCGGTTGGCCTCCTGTGAGATCCTACAG 601
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 795 CTCTAGTCCACCTGCAGCCAAGGCACAAATTGTCGGTTGGCCTCCAGTGAGATCCTACAG 854
Query 602 GAAGAACACATTGGCCACTACTTGTA 627
||||||||||||||||||||||||||
Sbjct 855 GAAGAACACATTGGCCACTACTTGTA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36771395604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5