BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952452
Length=541
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33710.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 789 0.0
AT5G26130.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 571 2e-162
> AT4G33710.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr4:16181012-16181776 FORWARD LENGTH=765
Length=765
Score = 789 bits (427), Expect = 0.0
Identities = 505/543 (93%), Gaps = 3/543 (1%)
Strand=Plus/Plus
Query 1 CAACTAAGATaaaaaa-aaaaaTGAAGATGTTTAACTCTCTTCAAACCCTAGTACTATTG 59
||||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 33 CAACTAAGAAAAAAAATAAAAATGAAGATGTTTATCTCTCCTCAAACCCTAGTACTATTG 92
Query 60 GCGTTAGCTCTTTTCCTAGCTTTTGTAGTTCCACTGAAAGCCCAAGACCAGCCAAAAGAC 119
|| ||||||||| |||||||||||| ||||||||||||||||||||||| || | |||||
Sbjct 93 GCATTAGCTCTTGTCCTAGCTTTTGCAGTTCCACTGAAAGCCCAAGACCGGCGACAAGAC 152
Query 120 TACCTCGCTGTACACAACCGTGCTCGAGACCACGTTGGTGTGCCTCATATAAAATGGCAT 179
||||| | ||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 153 TACCTTGATGTACACAACCATGCTCGAGACGACGTTAGTGTGCCTCATATAAAATGGCAT 212
Query 180 GCGGGGGCGGCGCGATACGCCTGGAACTATGCTCAAATAAGAAAGCGGGACTGTCGTCTC 239
||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 213 GCGGGAGCAGCCCGATACGCCTGGAACTATGCTCAAAGAAGAAAGCGGGACTGTCGTCTC 272
Query 240 AAACACTCAAACTCACGCGGGCGGTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATG 299
| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 273 ATTCACTCAAACTCACGCGGACGTTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATG 332
Query 300 TCCGGAGCTGCCGCAGTGAGATTGTGGGTCAAAGAGAAGTCTGACTACTTCCACAAATCG 359
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 333 TCCGGAGCTGCCGCAGTGAGATTGTGGGTCAGGGAGAAGTCTGACTACTTCCACAAATCG 392
Query 360 AACACATGTCGTGCTGGAAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTC- 418
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 393 AACACATGCCGTGCTGGAAAACAATGTGGTCATTATACTCAAGTTGTGTGGAAAAACTCA 452
Query 419 GAAGTGGGTTGGGTGTGCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAA 478
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GA-GTGGGTTGGATGTGCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAA 511
Query 479 CTATTTTCCTCCTGGTAATATTAGGGGCCGTTGGCCTTACTAAGTGTATGTGTACGCTGA 538
||||| || |||||||||| ||||||| ||| ||||||||||| | ||||||||||| ||
Sbjct 512 CTATTCTCATCCTGGTAATGTTAGGGGACGTAGGCCTTACTAACTATATGTGTACGCAGA 571
Query 539 CGA 541
|||
Sbjct 572 CGA 574
> AT5G26130.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr5:9128110-9128610 REVERSE LENGTH=501
Length=501
Score = 571 bits (309), Expect = 2e-162
Identities = 444/508 (87%), Gaps = 14/508 (3%)
Strand=Plus/Plus
Query 21 ATGAAGATGTTTAACTCTCTTCAAACCCTAGTACTATT-GGCGT-TAGCTCTTTTCCTAG 78
|||||||||||||| |||| |||||| ||| |||| || || | ||| |||||||||||
Sbjct 1 ATGAAGATGTTTAAATCTCCTCAAACACTAATACT-TTCGG-TTATAGTTCTTTTCCTAG 58
Query 79 CTTTTGTAGTTCCACTGAAAGCCCAAGACCAGCCAAAAGACTACCTCGCTGTACACAACC 138
|||||| |||||| ||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct 59 CTTTTGCAGTTCCTCTGAAAGCCCAAGACCAGCCACAAGACTACCTCGATGAACACAACC 118
Query 139 GTGCTCGAGA-CCACGTTGGTGTGCCTCATATAAAATGGCATGCGGGGGCGGCGCGATAC 197
|||||||| | ||| ||||||||||||| ||| ||||||||||||||||||| || ||||
Sbjct 119 GTGCTCGA-ACCCAAGTTGGTGTGCCTCCTATGAAATGGCATGCGGGGGCGGAGCAATAC 177
Query 198 GCCTGGAACTATGCTCAA-ATAAGAAAGCGG-GACTGTCGTCTCAAACACTCAAACTCAC 255
|||||||||||||||||| | ||||||| || |||||| |||||| ||||| ||||||
Sbjct 178 GCCTGGAACTATGCTCAACA-AAGAAAG-GGAGACTGTAGTCTCACTCACTCCAACTCAA 235
Query 256 GCGGGCGGTACGGTGAAAACTTGGCATGGAGCAGTGGTGATATGTCCGGAGCTGCCGCAG 315
|||| |||||||||||||||||||||||| | |||| | |||| ||||||| ||||
Sbjct 236 ATGGGCTTTACGGTGAAAACTTGGCATGGAGCGGAGGTGCTTTGTCTGGAGCTGAGGCAG 295
Query 316 TGAGATTGTGGGTCAAAGAGAAGTCTGACTACT-TCCACAAATCGAACACATGTCGTGCT 374
||| |||||||||||| |||||||||||||| | || || |||||||| ||| ||| |
Sbjct 296 TGAAATTGTGGGTCAACGAGAAGTCTGACTA-TATCTACGCTTCGAACACTTGTAGTGAT 354
Query 375 GGAAAACAATGTGGTCATTATACTCAGGTTGTGTGGAAAAACTCGAAGTGGGTTGGGTGT 434
|||||||||||||||||||| ||||| ||||||||| || |||| ||||||||||||||
Sbjct 355 GGAAAACAATGTGGTCATTACACTCAAGTTGTGTGGCGAACCTCGGAGTGGGTTGGGTGT 414
Query 435 GCCAAAGTCAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTTTCCTCCTGGT 494
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 415 GCCAAAGTAAAGTGTGACAATGGTGGAACCTTTGTGACTTGCAACTATTATCCACCTGGT 474
Query 495 AAT-ATTAGGGGCCGTTGGCCTTACTAA 521
||| || |||||||||||||||||||||
Sbjct 475 AATTAT-AGGGGCCGTTGGCCTTACTAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25920819852
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5