BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952470
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39800.1 | Symbols: P5CS1, ATP5CS | delta1-pyrroline-5-carbo... 1242 0.0
AT3G55610.1 | Symbols: P5CS2 | delta 1-pyrroline-5-carboxylate ... 756 0.0
> AT2G39800.1 | Symbols: P5CS1, ATP5CS | delta1-pyrroline-5-carboxylate
synthase 1 | chr2:16598164-16603319 REVERSE LENGTH=2886
Length=2886
Score = 1242 bits (672), Expect = 0.0
Identities = 718/740 (97%), Gaps = 4/740 (1%)
Strand=Plus/Plus
Query 272 AGCTTGATGATGTTATCGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTACTCAGA 331
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1816 AGCTTGATGACGTTATCGATCTTGTGATCCCAAGAGGAAGCAACAAGCTTGTTACTCAGA 1875
Query 332 TAAAAAATACTACAAAAATTCCTGTGCTTGGTCATGCTGATGGAATCTGTCATGTATATG 391
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1876 TAAAAAATACTACAAAAATCCCTGTGCTAGGTCATGCTGATGGAATCTGTCATGTATATG 1935
Query 392 TCGACAAGGCTTGTGATACGGATATGGCAAAGCGCATAGTTTCTGATGCAAAGTTGGACT 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1936 TCGACAAGGCTTGTGATACGGATATGGCAAAGCGCATAGTTTCTGATGCAAAGTTGGACT 1995
Query 452 ATCCAGCAGCCTGTAATGCGATGGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATG 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996 ATCCAGCAGCCTGTAATGCGATGGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATG 2055
Query 512 CTGTGCTCAATGAGCTTATTTTTGCTCTGCAGAGCAATGGAGTCACTTTGTATGGTGGAC 571
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056 CTGTGCTTAATGAGCTTATTTTTGCTCTGCAGAGCAATGGAGTCACTTTGTATGGTGGAC 2115
Query 572 CAAGGGCAAGTGCA-ATACTGAACATACCAGAAGCACGGTCATTCAACCATGAGTACTGT 630
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2116 CAAGGGCAAGTA-AGATACTGAACATACCAGAAGCACGGTCATTCAACCATGAGTACTGT 2174
Query 631 GCCAAGGCTTGCACTGTTGAAGTTGTTGAAGACGTTTATGGTGCTATAGATCACATTCAC 690
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2175 GCCAAGGCTTGCACTGTTGAAGTTGTAGAAGACGTTTATGGTGCTATAGATCACATTCAC 2234
Query 691 CGACATGGAAGTGCACACACAGACTGCATTGTGACAGAGGATCACGAAGTTGCAGAGCTA 750
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 CGACATGGGAGTGCACACACAGACTGCATTGTGACAGAGGATCACGAAGTTGCAGAGCTA 2294
Query 751 TTCCTTCGCCAAGTGGACAGCGCTGCTGTTTTCCACAACGCAAGCACACGATTCTCAGAT 810
||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 2295 TTCCTTCGCCAAGTGGATAGCGCTGCTGTGTTCCACAACGCCAGCACAAGATTCTCAGAT 2354
Query 811 GGTTTCCGATTTGGACTTGGTGCTGAGGTGGGAGTAAGCACGGGCCGTATCCATGCTCGT 870
||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||||
Sbjct 2355 GGTTTCCGATTTGGACTTGGTGCAGAGGTGGGGGTAAGCACGGGCAGGATCCATGCTCGT 2414
Query 871 GGTCCAGTCGGGGTCGAAGGATTACTTACAACGAGATGGATAATGAGAGGAAAAGGACAA 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2415 GGTCCAGTCGGGGTCGAAGGATTACTTACAACGAGATGGATAATGAGAGGAAAAGGACAA 2474
Query 931 GTTGTCGACGGAGACAATGGAATTGTTTACACCCATCAGGACATTCCCATCCAAGCTTAA 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2475 GTTGTCGACGGAGACAATGGAATTGTTTACACCCATCAGGACATTCCCATCCAAGCTTAA 2534
Query 991 AACAAAACGTC-GAGTGTGT 1009
| ||| || || ||||||||
Sbjct 2535 A-CAAGACTTCCGAGTGTGT 2553
Score = 244 bits (132), Expect = 1e-63
Identities = 146/153 (95%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 34 AGTGGTAATGGTCTTCTGTTGAAGGGTGGAAAAGAGGCCCGGCGATCAAATGCTATCTTA 93
||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1665 AGTGGAAATGGTCTTCTGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTA 1724
Query 94 CACAAGGTGATTACTGATGCAATTCCAGAGACGGTCGGGGGTAAACTCATTGGACTTGTG 153
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1725 CACAAGGTGATCACTGATGCAATTCCAGAGACTGTTGGGGGTAAACTCATTGGACTTGTG 1784
Query 154 ACTTCAAGAGAAGAGATTCCTGATTTGCTCAAG 186
||||||||||||||||||||||||||||| |||
Sbjct 1785 ACTTCAAGAGAAGAGATTCCTGATTTGCTTAAG 1817
Score = 65.8 bits (35), Expect = 8e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 TTGTTTTTGAATCCCGACCTGATGCACTTGTACAG 35
|||||||||||||||||||||||||||||||||||
Sbjct 1609 TTGTTTTTGAATCCCGACCTGATGCACTTGTACAG 1643
> AT3G55610.1 | Symbols: P5CS2 | delta 1-pyrroline-5-carboxylate
synthase 2 | chr3:20624020-20629093 REVERSE LENGTH=2543
Length=2543
Score = 756 bits (409), Expect = 0.0
Identities = 608/705 (86%), Gaps = 10/705 (1%)
Strand=Plus/Plus
Query 272 AGCTTGATGATGTTATCGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTACTCAGA 331
|||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1540 AGCTTGATGACGTTATTGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTTCTCAAA 1599
Query 332 TAAAAAA-TACTACAAAAATTCCTGTGCTTGGTCATGCTGATGGAATCTGTCATGTATAT 390
||||||| | | || ||||| || ||||| || |||||||||||||||||||||||||||
Sbjct 1600 TAAAAAACT-CGACGAAAATCCCAGTGCTAGGCCATGCTGATGGAATCTGTCATGTATAT 1658
Query 391 GTCGACAAGGCTTGTGATAC-GGATATGGCAAAGCGCATAGTTTCTGATGCAAAGTTGGA 449
|| || ||| || || | || ||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1659 GTTGATAAGTCTGGT-AAACTGGACATGGCAAAGCGCATTGTTTCCGATGCAAAGTTGGA 1717
Query 450 CTATCCAGCAGCCTGTAATGCGATGGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAA 509
||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||
Sbjct 1718 CTATCCAGCAGCCTGTAATGCGATGGAAACCCTTCTTGTACATAAAGATTTGGAGCAGAA 1777
Query 510 TGCTGTGCTCAATGAGCTTATTTTTGCTCTGCAGAGCAATGGAGTCACTTTGTATGGTGG 569
|| | | ||| |||| ||||||| || |||||| | ||| || |||||||||||||||||
Sbjct 1778 TGGTTTTCTCGATGATCTTATTTATGTTCTGCAAACCAAAGGCGTCACTTTGTATGGTGG 1837
Query 570 ACCAAGGGCAAGTGCAATACTGAACATACCAGAAGCACGGTCATT-CAACCATGAGTACT 628
||||| |||||||||| |||||| || || ||| || ||||| || ||| ||||||
Sbjct 1838 GCCAAGAGCAAGTGCAAAACTGAATATTCCGGAAACAAAATCATTTCA-CCACGAGTACA 1896
Query 629 GTGCCAAGGCTTGCACTGTTGAAGTTGTTGAAGACGTTTATGGTGCTATAGATCACATTC 688
|| ||||||| ||||| |||||| |||| |||||||| ||||||||||||||||| ||||
Sbjct 1897 GTTCCAAGGCCTGCACCGTTGAAATTGTAGAAGACGTATATGGTGCTATAGATCATATTC 1956
Query 689 ACCGACATGGAAGTGCACACACAGACTGCATTGTGACAGAGGATCAC-GAAGTTGCAGAG 747
||| |||||||||||||||||| || ||||| ||||| || ||| | ||||| |||||
Sbjct 1957 ACCAACATGGAAGTGCACACACTGATTGCATAGTGACGGAAGAT-AGTGAAGTAGCAGAA 2015
Query 748 CTATTCCTTCGCCAAGTGGACAGCGCTGCTGTTTTCCACAACGCAAGCACACGATTCTCA 807
||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 2016 ATATTCCTCCGCCAAGTGGACAGTGCTGCTGTTTTCCACAATGCAAGCACAAGATTCTCT 2075
Query 808 GATGGTTTCCGATTTGGACTTGGTGCTGAGGTGGGAGTAAGCACGGGCCGTATCCATGCT 867
|||||||| | || ||||||||||||||||||||| ||||||| || | || |||||
Sbjct 2076 GATGGTTTTAGGTTCGGACTTGGTGCTGAGGTGGGAATAAGCACAAGCAGGATTCATGCC 2135
Query 868 CGTGGTCCAGTCGGGGTCGAAGGATTACTT-ACAACGAGATGGATAATGAGAGGAAAAGG 926
||||||||||| || || ||||||||| || ||||| |||||||||||||||||||| ||
Sbjct 2136 CGTGGTCCAGTTGGAGTTGAAGGATTA-TTGACAACAAGATGGATAATGAGAGGAAAGGG 2194
Query 927 ACAAGTTGTCGACGGAGACAATGGAATTGTTTACACCCATCAGGA 971
||||||||| || |||||||||||||| |||||||||||| ||||
Sbjct 2195 ACAAGTTGTGGATGGAGACAATGGAATCGTTTACACCCATAAGGA 2239
Score = 211 bits (114), Expect = 1e-53
Identities = 140/153 (92%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 34 AGTGGTAATGGTCTTCTGTTGAAGGGTGGAAAAGAGGCCCGGCGATCAAATGCTATCTTA 93
||||| |||||||||||| ||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1389 AGTGGAAATGGTCTTCTGCTGAAGGGTGGAAAGGAGGCTCGTCGATCAAATGCTATCTTA 1448
Query 94 CACAAGGTGATTACTGATGCAATTCCAGAGACGGTCGGGGGTAAACTCATTGGACTTGTG 153
||||||||||| |||||||||||||| ||||| || || ||||||||||| |||||||||
Sbjct 1449 CACAAGGTGATCACTGATGCAATTCCGGAGACTGTTGGAGGTAAACTCATAGGACTTGTG 1508
Query 154 ACTTCAAGAGAAGAGATTCCTGATTTGCTCAAG 186
|| |||||||| |||||||||||||||||||||
Sbjct 1509 ACCTCAAGAGAGGAGATTCCTGATTTGCTCAAG 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5