BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952484

Length=205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:2...   207    2e-53


> AT1G69370.1 | Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:26079956-26081727 
FORWARD LENGTH=1261
Length=1261

 Score =  207 bits (112),  Expect = 2e-53
 Identities = 160/182 (88%), Gaps = 7/182 (4%)
 Strand=Plus/Plus

Query  5    CTCTTTTGATTCTCCGATGGAGGCTAAGCTACTCAAACCCGCGTTTTACAGTTCCCCAAG  64
            |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| 
Sbjct  127  CTCTTTTGATTCTCCGATGGAGGCTAAGTTACTCAAACCCGCGTTTTACAATTCCCCAAA  186

Query  65   CCTCAATCTCGCGAATTCTACAAAACCCATCTCGCAATTATCAATCTTCAACGGTAAATC  124
            |||||||||  |||||||| ||| || |||||||| |||||||||||  |||| ||||||
Sbjct  187  CCTCAATCTTACGAATTCTTCAAGACTCATCTCGCGATTATCAATCTGGAACGATAAATC  246

Query  125  GAG-GTTTGGACTATCT---GGGTCTCTCT-CCTTCCGTCTCTCCACAGCTTCTCCGATC  179
             |  ||| |||||||||   |||||||||| ||| |||||||||| ||||||||||||||
Sbjct  247  AAAAGTT-GGACTATCTTCTGGGTCTCTCTTCCT-CCGTCTCTCCGCAGCTTCTCCGATC  304

Query  180  CG  181
            ||
Sbjct  305  CG  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9154845882


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5