BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952500

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31970.1 | Symbols: RAD50, ATRAD50 | DNA repair-recombinatio...  1050    0.0  


> AT2G31970.1 | Symbols: RAD50, ATRAD50 | DNA repair-recombination 
protein (RAD50) | chr2:13600491-13609069 FORWARD LENGTH=4371
Length=4371

 Score = 1050 bits (568),  Expect = 0.0
 Identities = 584/592 (99%), Gaps = 0/592 (0%)
 Strand=Plus/Plus

Query  10    AGACAACTGAAATGGCAAATAAAGACTTGGATAGATACTACAATGCCCTTGACAAAGCAC  69
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3546  AGACAACTGAAATGGCAAATAAAGACTTGGATAGATACTACAATGCCCTTGACAAAGCAC  3605

Query  70    TAATGCGCTTCCACACAATGAAAATGGAGGAAATAAATAAGATTATAAGGGAACTGTGGC  129
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3606  TAATGCGCTTCCACACAATGAAAATGGAGGAAATAAATAAGATTATAAGGGAACTGTGGC  3665

Query  130   AGCAGACATACAGAGGTCAAGATATGGATTACATACGAATACACTCAGATTCCGAAGGTG  189
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3666  AGCAGACATACAGAGGTCAAGATATGGATTACATACGAATACACTCAGATTCCGAAGGTG  3725

Query  190   CAGGCACCCGCTCTTACAGCTACAAGGTTCTTATGCAGACTGGTGATACAGAACTTGAAA  249
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3726  CAGGCACCCGCTCTTACAGCTACAAGGTTCTTATGCAGACTGGTGATACAGAACTTGAAA  3785

Query  250   TGAGAGGAAGATGCAGCGCAGGTCAAAAGGTTCTTGCTTCATTGATAATTAGGTTGGCTT  309
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  3786  TGAGAGGAAGATGCAGTGCAGGTCAAAAGGTTCTTGCTTCATTGATAATTAGGTTGGCTT  3845

Query  310   TAGCTGAGACATTTTGCTTAAACTGTGGAATATTAGCCCTCGATGAGCCAACTACAAACC  369
             |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  3846  TAGCCGAGACATTTTGCTTAAACTGTGGAATATTAGCCCTTGATGAGCCAACTACAAACC  3905

Query  370   TGGATGGGCCCAATTCAGAATCTCTTGCAGGAGCTCTTCTTAGGATCATGGAAGACAGAA  429
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3906  TGGATGGGCCCAATTCAGAATCTCTTGCAGGAGCTCTTCTTAGGATCATGGAAGACAGAA  3965

Query  430   AGGGCCAAGAGAATTTCCAACTCATAGTCATTACCCACGATGAACGCTTTGCTCAAATGA  489
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3966  AGGGCCAAGAGAATTTCCAACTCATAGTCATTACCCACGATGAACGCTTTGCTCAAATGA  4025

Query  490   TTGGCCAACGGCAACATGCTGAAAAATATTACCGGGTCGCAAAAGATGATATGCAACACA  549
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4026  TTGGCCAAAGGCAACATGCTGAAAAATATTACCGGGTCGCAAAAGATGATATGCAACACA  4085

Query  550   GCATAATCGAGGCCCAAGAGATCTTTGATTGATAAATTGGTTGCTTGTTCTA  601
             ||||||||||||||||||||||||||||||||||||   || ||||||||||
Sbjct  4086  GCATAATCGAGGCCCAAGAGATCTTTGATTGATAAACCAGTGGCTTGTTCTA  4137



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28934868672


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5