BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952502
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31990.1 | Symbols: | Exostosin family protein | chr2:13611... 893 0.0
> AT2G31990.1 | Symbols: | Exostosin family protein | chr2:13611351-13613573
REVERSE LENGTH=1611
Length=1611
Score = 893 bits (483), Expect = 0.0
Identities = 582/629 (93%), Gaps = 9/629 (1%)
Strand=Plus/Plus
Query 195 TGGCAAGACAAGATCAGGCTCACTAACCGGACGATCCTCTTCTCATTCGCCGGAGCTCAA 254
|||||||| ||||||||||| || ||||||||| ||||||||||||| ||||||||||||
Sbjct 851 TGGCAAGAAAAGATCAGGCTTACAAACCGGACGGTCCTCTTCTCATTTGCCGGAGCTCAA 910
Query 255 AGACCAATTAGAAACCAGAACGGTTTGGTTCGCACTCAAGTTATAAAACAATGCAAGAGC 314
||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 911 AGACCAAGCAGAAACCAGAACGGTGTGGTTCGCACTGAAGTTATAAAACAATGCAAGAGT 970
Query 315 TCATCTAATACGTGTAGGTTTCTTGACTGTGACGTCAAAGCCAATATTAGCTGCGATGAT 374
|||||||| ||||||||||||||||||||||||||||| | ||| | |||||| ||||||
Sbjct 971 TCATCTAAAACGTGTAGGTTTCTTGACTGTGACGTCAATG-CAA-A-TAGCTGTGATGAT 1027
Query 375 CCGATCAGTCTGATGAAACTTTTCGAGAGTTCAG-TTTTCTGCTTACAACCACCGGGTGA 433
|||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 1028 CCGATCAGTCTGATGAAACTTTTCGAGAGTTC-GACTTTCTGCTTACAACCGCCGGGTGA 1086
Query 434 TTCGTTAACCAGAAGATCGGTATTTGATTCAATCTTGGCTGGTTGTATTCCGGTTTTCTT 493
|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1087 TTCGTTGACCAGAAAATCGGTATTTGATTCAATCTTGGCTGGTTGTATACCGGTTTTCTT 1146
Query 494 TAACCAAGGTAGCGCATACAAGCAATATAGATGGCACATACCTAAGAACAATAGCGAATA 553
||||||||| || ||||||||||||||| |||||||||||||||||| | |||| ||||
Sbjct 1147 TAACCAAGGAAGTGCATACAAGCAATATTTATGGCACATACCTAAGAATAGTAGCAAATA 1206
Query 554 TTCGGTTTATATACCGGTTAAGGAGCTGAGAACCGGGGGAAAGAACAAAATCGAAGAGAT 613
||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1207 TTCTGTTTATATAACGGTTAAGGAGCTGAGAACCGGTGGAAAGAACAAAATCGAAGAGAT 1266
Query 614 TTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAGATTGAT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 TTTGCGTGGAATACCAAATGAGAGAGTGGTTGGTATGAGAGAAAACGTAATAAGATTGAT 1326
Query 674 TCCGAAGATTGTGTATAG-TAAACCAAACCGGAACAAACCAGATGGAGAGATTCTTGAAG 732
|||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1327 TCCGAAGATTGTGTAT-GCTAAACCAAACCGGAACAAACCGGATGGAGAGATTCTTGAAG 1385
Query 733 ATGCTTTTGATGTTGCTGTGAAGGGAGTGGTTA-AGGGAATAGAAGGGATAAGGAGAAAA 791
|| |||||||||||||||||||||||||| | | || ||||||||||||||||||||||
Sbjct 1386 ATTCTTTTGATGTTGCTGTGAAGGGAGTGCT-AGAGAGAATAGAAGGGATAAGGAGAAAC 1444
Query 792 GAATTCAAGACTGAGTAACTAAGTTTATA 820
|||||||| ||||| || | || ||||||
Sbjct 1445 GAATTCAAAACTGATTAGCAAATTTTATA 1473
Score = 222 bits (120), Expect = 4e-57
Identities = 153/169 (91%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 17 AGATATGTCAGGTAGAGACCATTTCCTCGTAACCGGTCGGATTTCACGAGATTTCCGGCG 76
|||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 628 AGATATGTCAGGTAAAAACCATTTCCTTGTAACCGGTCGGATTTCACGAGATTTCCGGCG 687
Query 77 AAACTCCGACAATAAGTCCGCATGGGGAACCAACGTCATGCTCT-ACCCGGAGTCTCTAA 135
|||||||| || || ||| ||||||||||||||| ||||||||| | | | |||| ||||
Sbjct 688 AAACTCCGGCAGTAGGTCAGCATGGGGAACCAACTTCATGCTCTTATCTG-AGTCGCTAA 746
Query 136 ACCTCACTTTCCTCACCATGGAACGTAGTCTAACGAGCCACAACGAGTT 184
||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 747 ACCTCACTTTCCTCAGCATTGAACGAAGTCTAACGAGCCACAACGAGTT 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40388254188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5