BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952505
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16040.1 | Symbols: | Translation machinery associated TMA7... 375 7e-104
> AT3G16040.1 | Symbols: | Translation machinery associated TMA7
| chr3:5443091-5443952 FORWARD LENGTH=448
Length=448
Score = 375 bits (203), Expect = 7e-104
Identities = 220/228 (96%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 1 CCCTAACCCTAAAATTTAGCCATGTCGTCCAAGCAAGGAGGGAAATTGAAGCCTTTGAAG 60
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 91 CCCTAACCCTAAAATTCAGCCATGTCTTCCAAGCAAGGAGGGAAATTGAAGCCTTTGAAG 150
Query 61 CAGCCTAAGTCTGGTAAGAAGGAGTACGATGAGCACGATATGGAGTTAATGCAGAAAAAG 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 CAGCCCAAGTCTGGTAAGAAGGAGTACGATGAGCACGATATGGAGTTAATGCAGAAAAAG 210
Query 121 AAGGATGAAGAGAAGGCACTTAAAGAACTCAGGGCCAAGGCTTCACAAAAGGGATCATTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 211 AAGGATGAAGAGAAGGCACTTAAAGAACTCAGGGCCAAGGCTTCACAAAAAGGATCATTC 270
Query 181 GGAGGCACAGGACTTAAGAAGAGTGGAAAGAAATAAGACTAA-TCTGC 227
|||||| ||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 271 GGAGGCTCAGGACTTAAGAAAAGTGGGAAGAAATAAGACTAAATCTGC 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10656762788
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5