BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952507

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16060.1 | Symbols:  | ATP binding microtubule motor family ...   220    4e-57


> AT3G16060.1 | Symbols:  | ATP binding microtubule motor family 
protein | chr3:5447343-5451527 FORWARD LENGTH=2546
Length=2546

 Score =  220 bits (119),  Expect = 4e-57
 Identities = 149/163 (91%), Gaps = 3/163 (2%)
 Strand=Plus/Plus

Query  1    CTCCGATTCGAGCTAGAGGC---AATGAACGGAAGACAGAGATCTGGCGCAGCGGCGGTG  57
            |||||||||||||||||| |   ||||| |||||||||||||||||  ||||||||||||
Sbjct  137  CTCCGATTCGAGCTAGAGTCAATAATGAGCGGAAGACAGAGATCTGTTGCAGCGGCGGTG  196

Query  58   CACCACCAGAGACAGCTTTCCGATAACCCTCTCGACATGTCTTCCTCCAATGGCCGATGG  117
            || |||||||| ||||| ||||||||||||||||| |||||||| ||||||||| |||||
Sbjct  197  CATCACCAGAGGCAGCTCTCCGATAACCCTCTCGATATGTCTTCATCCAATGGCAGATGG  256

Query  118  CTTCAATCTACTGGTCTTCAGCATTTTCAGTCATCCGCCAATG  160
            |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  257  CTTCAATCCACTGGTCTTCAGCATTTTCAGTCATCCGCCAATG  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5