BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952511

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18140.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   220    3e-57


> AT3G18140.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr3:6212596-6214785 REVERSE LENGTH=1283
Length=1283

 Score =  220 bits (119),  Expect = 3e-57
 Identities = 125/128 (98%), Gaps = 0/128 (0%)
 Strand=Plus/Plus

Query  1    CGGGATAAAATCGATCGAAAATGAGTCAGCCTTCTGTGATTCTTGCTACAGCTAGCTATG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  199  CGGGATAAAATCGATCGAAAATGAGTCAGCCTTCTGTGATTCTTGCTACGGCTAGCTATG  258

Query  61   ATCACACGATTCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATC  120
            ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  ATCACACCATCCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATC  318

Query  121  CTGATTCG  128
            ||||||||
Sbjct  319  CTGATTCG  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8551229670


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5