BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952512
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27740.1 | Symbols: CARA | carbamoyl phosphate synthetase A ... 512 3e-144
AT3G18145.1 | Symbols: | pseudogene, similar to putative carba... 496 3e-139
> AT3G27740.1 | Symbols: CARA | carbamoyl phosphate synthetase
A | chr3:10281261-10283866 REVERSE LENGTH=1576
Length=1576
Score = 512 bits (277), Expect = 3e-144
Identities = 438/517 (85%), Gaps = 6/517 (1%)
Strand=Plus/Plus
Query 574 GTTATTGCATATGATTTCGGGATCAAGCAAAACATCCTAAGACG-CTTGGCATCATACGG 632
|||||||| || ||||| || ||||||||||||||||||||||| ||| |||| |||||
Sbjct 804 GTTATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTT-TCATCTTACGG 862
Query 633 CTGTGAAATCACGGTTGTCCCATCAACATGGCCAGCTGCAGAGGCTCTTAAAATGAATCC 692
||| ||||||| ||||| || || |||| |||||||| ||||| || |||||||||||
Sbjct 863 ATGTCAAATCACTGTTGTTCCGTCCACATTTCCAGCTGCCGAGGCGCTGAAAATGAATCC 922
Query 693 AGACGGAATTCTATTCAGCAACGGTCCAGGAGATCCTTCTGCAGTGCCTTATGCAGTTGA 752
||| || ||| | |||||||||||||| ||||| |||||||| ||||| ||||| |||||
Sbjct 923 AGATGGGATTTTGTTCAGCAACGGTCCTGGAGACCCTTCTGCTGTGCCATATGCTGTTGA 982
Query 753 AACGGTTAAAGAGCTTCTAGGAAAAGTTCCTGTCTATGGAATCTGTATGGGTCATCAGTT 812
|| |||||||||||||| || ||||| ||||| || |||||||||||||| ||||||||
Sbjct 983 GACAGTTAAAGAGCTTCTCGGTAAAGTCCCTGTTTACGGAATCTGTATGGGCCATCAGTT 1042
Query 813 ACTTGGACAAGCTCTT-GGAGGTAAAACCTAT-AAGATGAAGTTTGGTCATCATGGAGGA 870
||||| |||||| || || |||||||||| | |||||||||||||||||||||||||||
Sbjct 1043 GCTTGGTCAAGCT-TTGGGGGGTAAAACCT-TCAAGATGAAGTTTGGTCATCATGGAGGA 1100
Query 871 AACCATCCAGTTTGTAACAACAGAACGGGCCATGTCGAGATCAGTGCTCAGAACCATAAC 930
||||| |||||| ||||||||||||| || || || ||||||||||||||||| || |||
Sbjct 1101 AACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGAATCACAAC 1160
Query 931 TATGCAGTAGACCCAGCTTCTCTCCCCTCCGGTGTCGAAGTGACTCATGTCAATCTCAAC 990
||||| || || |||||||| || ||| || || ||||| || ||||||||||||||
Sbjct 1161 TATGCGGTTGATCCAGCTTCACTTCCCGGAGGCGTAGAAGTAACACATGTCAATCTCAAT 1220
Query 991 GATGGAAGTTGCGCTGGTCTCTCTTTTCCGGCAATGAATGTCATGTCTCTTCAGTATCAC 1050
|||||||| || || ||||| ||||| |||| ||||||||| ||||| || ||||| |||
Sbjct 1221 GATGGAAGCTGTGCGGGTCTATCTTTCCCGGAAATGAATGTTATGTCACTCCAGTACCAC 1280
Query 1051 CCTGAGGCTTCTCCTGGACCTCATGACTCCGATAACG 1087
||||| || || ||||||||||| ||||| |||||||
Sbjct 1281 CCTGAAGCCTCCCCTGGACCTCACGACTCTGATAACG 1317
Score = 375 bits (203), Expect = 4e-103
Identities = 309/359 (86%), Gaps = 11/359 (3%)
Strand=Plus/Plus
Query 221 TGGAGAAACCTTGGAGC-TCATACAATGCTAGGCTTGTGTTAGAAGATGGCTCTATGTGG 279
||||||||||||||| | || ||||||||||||||||||||||||||||| ||||| |||
Sbjct 220 TGGAGAAACCTTGGA-CTTCGTACAATGCTAGGCTTGTGTTAGAAGATGGTTCTATCTGG 278
Query 280 TCGGCTAAGTCTTTTGGTGCTTCTGGAACCCGTGTTGCTGAATTGGTTTTTAACACCTCT 339
| |||||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||
Sbjct 279 CCTGCTAAGTCTTTTGGTGCTCCTGGAACCCGTATTGCTGAATTGGTGTTTAACACTTCC 338
Query 340 TTGACAGGGTATCAAGAAATTCTGACTGATCCTAGTTATGCTGGACAATTTGTGCTTATG 399
||||||||||||||||||||| | |||||||||||||||||||| || |||||||| |||
Sbjct 339 TTGACAGGGTATCAAGAAATTTTAACTGATCCTAGTTATGCTGGGCAGTTTGTGCTAATG 398
Query 400 ACAAATCCTCAGATCGGTAACACCGGTGTCAATCCCGATGATGAAGAATCAAGGCAATG- 458
||||| || || || ||||| || ||||||||||| |||||||||||||| |||||||
Sbjct 399 ACAAACCCACAAATTGGTAATACTGGTGTCAATCCTGATGATGAAGAATCTGGGCAATGC 458
Query 459 TTT-TT--TGGT--G---ATAAGAAGTCTTAGCATCAGTACCTCAAACTGGAGATGTACG 510
||| || |||| | ||||||| || ||||| |||||||||||||||||||| |||
Sbjct 459 TTTCTTACTGGTTTGGTGATAAGAAACCTAAGCATTAGTACCTCAAACTGGAGATGCACG 518
Query 511 AAAACACTTGGTGACTATCTAGCAGAGAGGAACATTATGGGAATCTATGATCTTGACAC 569
|| ||||||| ||| |||||| | || ||| |||| |||||| | ||||||||||||||
Sbjct 519 AAGACACTTGCTGATTATCTAACCGAAAGGGACATCATGGGAGTTTATGATCTTGACAC 577
> AT3G18145.1 | Symbols: | pseudogene, similar to putative carbamoyl
phosphate synthase small subunit, blastp match of 89%
identity and 4.4e-115 P-value to GP|21535793|emb|CAC85725.1||AJ319873
putative carbamoyl phosphate synthase small subunit
{Nicotiana tabacum} | chr3:6214980-6217276 FORWARD LENGTH=2297
Length=2297
Score = 496 bits (268), Expect = 3e-139
Identities = 290/301 (96%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 621 GGCATCATACGGCTGTGAAATCACGGTTGTCCCATCAACATGGCCAGCTGCAGAGGCTCT 680
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1405 GGCATCATACGGTTGTGAAATCACAGTTGTCCCATCGACATGGCCAGCTGCAGAGGCGCT 1464
Query 681 TAAAATGAATCCAGACGGAATTCTATTCAGCAACGGTCCAGGAGATCCTTCTGCAGTGCC 740
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TAAAATGAAACCAGACGGGATTCTATTCAGCAACGGTCCAGGAGATCCTTCTGCAGTGCC 1524
Query 741 TTATGCAGTTGAAACGGTTAAAGAGCTTCTAGGAAAAGTTCCTGTCTATGGAATCTGTAT 800
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 TTATGCAGTTGAGACGGTTAAAGAGCTTCTAGGAAAAGTTCCTGTCTATGGAATCTGTAT 1584
Query 801 GGGTCATCAGTTACTTGGACAAGCTCTTGGAGGTAAAACCTATAAGATGAAGTTTGGTCA 860
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1585 GGGTCATCAGTTACTTGGACAAGCTCTTGGAGGTAAAACCTTTAAGATGAAATTTGGTCA 1644
Query 861 TCATGGAGGAAACCATCCAGTTTGTAACAACAGAACGGGCCATGTCGAGATCAGTGCTCA 920
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1645 TCATGGAGGAAACCATCCAGTTCGTAACAACAGAACCGGCCATGTCGAGATCAGTGCTCA 1704
Query 921 G 921
|
Sbjct 1705 G 1705
Score = 300 bits (162), Expect = 2e-80
Identities = 232/263 (88%), Gaps = 15/263 (6%)
Strand=Plus/Plus
Query 922 AACCATAACTATGCAGTAGACCCAGCTTCTCTCCCCTCCGGTGTCGAAGTGACTCATGTC 981
||||||||||||||||| |||||||||||||| ||| |||| || ||||||||||| |||
Sbjct 1977 AACCATAACTATGCAGTGGACCCAGCTTCTCTTCCCACCGGCGTGGAAGTGACTCACGTC 2036
Query 982 AATCTCAACGATGGAAGTTGCGCTGGTCTCTCTTTTCCGGCAATGAATGTCATGTCTCTT 1041
||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 2037 AATCTCAACGACGGAAGTTGCGCCGGTCTCTCTTTTCCGGCAATGCATGTCATGTCTCTT 2096
Query 1042 CAGTATCACCCTGAGGCTTCTCCTGGACCTCATGACTCCGATAACGGTATTACACTATTC 1101
||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 2097 CAGTATCACCCTGAGGCTTCTCCTGGACCTCATGACTCCGACAACGGTATTAAACCATTC 2156
Query 1102 TTT-T---CCCTCTTGTCTGGTAACTATCAAAACGCAAA-G----------GCTATGCAT 1146
||| | |||| |||||||||| ||||||||||| ||| | |||||||||
Sbjct 2157 TTTCTTTTCCCTTTTGTCTGGTACCTATCAAAACGTAAACGCTACTAAAACGCTATGCAT 2216
Query 1147 TAATCTTTGCCTAATCTTTTCAT 1169
|||| ||||||||||||||||||
Sbjct 2217 TAATTTTTGCCTAATCTTTTCAT 2239
Score = 202 bits (109), Expect = 7e-51
Identities = 121/127 (95%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 223 GAGAAACCTTGGAGCTCATACAATGCTAGGCTTGTGTTAGAAGATGGCTCTATGTGGTCG 282
|||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 667 GAGAAACCATGGAGCTCATACAATGCTAGGCTAGTGTTAGAAGATGGCTCTGTTTGGTCA 726
Query 283 GCTAAGTCTTTTGGTGCTTCTGGAACCCGTGTTGCTGAATTGGTTTTTAACACCTCTTTG 342
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 727 GCTAAGTCTTTTGGTGCTTCTGGAACCCGTGTTGCTGAATTGGTATTTAACACCTCTTTG 786
Query 343 ACAGGGT 349
|||||||
Sbjct 787 ACAGGGT 793
Score = 78.7 bits (42), Expect = 1e-13
Identities = 44/45 (98%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 573 GGTTATTGCATATGATTTCGGGATCAAGCAAAACATCCTAAGACG 617
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1292 GGTTATTGCATATGATTTCGGGATCAAGCAAAACATTCTAAGACG 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57379222935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5