BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952522
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13640.1 | Symbols: ATRLI1, RLI1 | RNAse l inhibitor protein... 1221 0.0
> AT3G13640.1 | Symbols: ATRLI1, RLI1 | RNAse l inhibitor protein
1 | chr3:4458461-4461733 REVERSE LENGTH=2197
Length=2197
Score = 1221 bits (661), Expect = 0.0
Identities = 701/721 (97%), Gaps = 0/721 (0%)
Strand=Plus/Plus
Query 1 TCACAGACTCTCAGATTATCGTTATGCTTGGAGAGAATGGTACAGGGAAAACGACCTTCA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1207 TCACAGACTCTCAGATTATCGTAATGCTTGGAGAGAATGGTACAGGGAAAACGACCTTCA 1266
Query 61 TCCGGATGCTGGCAGGCGTATTCCCACGTGAAGAGGGTGTAGAATCGGAGATTCCAGAGT 120
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1267 TCCGGATGCTGGCAGGCGCATTCCCACGTGAAGAGGGTGTACAATCGGAGATTCCAGAGT 1326
Query 121 TTAATGTGTCGTACAAACGGCAAGGGAATGATTCGAAGCGCGAGTGTACAGTGAGACAGT 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TTAATGTGTCGTACAAACCGCAAGGGAATGATTCGAAGCGCGAGTGTACAGTGAGACAGT 1386
Query 181 TGCTACATGAAAAGATTCGTGATGCATATACACATCCTCAGTTTGTGTCAGATGTAATAA 240
|||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1387 TGCTACATGACAAGATTCGTGATGCATGCGCACATCCTCAGTTTATGTCAGATGTAATAA 1446
Query 241 GACCGCTTCAGATTGAGCAGTTGTTGGACCAAGTGGTAAAAACTCTTTCTGGTGGAGAGA 300
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1447 GACCGCTTCAGATTGAGCAGTTGATGGACCAAGTGGTAAAAACTCTGTCTGGTGGAGAGA 1506
Query 301 AGCAGAGGGTTGCCATTACTCTATGCCTCGGGAAGCCCGCTGATATCTATCTGATTGACG 360
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1507 AGCAGAGGGTTGCCATTACTCTATGCCTTGGGAAGCCTGCTGATATCTATCTGATTGACG 1566
Query 361 AGCCAAGTGCGCATTTGGACTCAGAGCAGCGGATCACAGCTTCAAAGGTCATAAAACGGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 AGCCAAGTGCGCATTTGGACTCAGAGCAGCGGATCACAGCTTCAAAGGTCATAAAACGGT 1626
Query 421 TCATCCTGCACGCAAAGAAAACCGCGTTTATTGTGGAGCATGACTTCATAATGGCAACCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 TCATCCTGCACGCAAAGAAAACCGCGTTTATTGTGGAGCATGACTTCATAATGGCAACCT 1686
Query 481 ATCTTGCGGACCGAGTCATTGTGTACGAAGGACAGCCAGCTGTCAAGTGTATTGCTCATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 ATCTTGCGGACCGAGTCATTGTGTACGAAGGACAGCCAGCTGTCAAGTGTATTGCTCATT 1746
Query 541 CTCCACAGTCGCTGCTCAGCGGAATGAACCTCTTCTTATCGCACTTGAATATCACATTCA 600
||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||||||
Sbjct 1747 CTCCACAGTCGCTGCTCAGTGGAATGAACCACTTCCTATCGCACTTGAACATCACATTCA 1806
Query 601 GACGGGATCCCACTAATTTCAGGCCGAGGATAAACAAACTAGAGTCCATCAAGGACAAGG 660
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1807 GACGGGATCCGACTAACTTCAGGCCAAGGATAAACAAACTAGAGTCCATCAAGGACAAGG 1866
Query 661 AGCAAAAGACTGCAGGATCATACTACTACTTAGACGATTGATTGATCGGTCAGAGAGAGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 AGCAAAAGACTGCAGGATCATACTACTACTTAGACGATTGATTGATCGGTCAGAGAGAGA 1926
Query 721 T 721
|
Sbjct 1927 T 1927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5