BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952525
Length=379
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63230.1 | Symbols: | Carbohydrate-binding X8 domain superf... 451 2e-126
AT5G63225.1 | Symbols: | Carbohydrate-binding X8 domain superf... 326 1e-88
> AT5G63230.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr5:25357360-25357822 REVERSE LENGTH=463
Length=463
Score = 451 bits (244), Expect = 2e-126
Identities = 329/370 (89%), Gaps = 6/370 (2%)
Strand=Plus/Plus
Query 8 CTTTACCATTTCCAATGTCGTCGTTGCAACTTTTAACACTTGTTCTTCTCGTATCAACTG 67
||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1 CTTCACCACTTCCAATGTCGTCGTTGCAACTTTTAACACTTCTTCTTCTCATATCAACTG 60
Query 68 TCGCTATCCCCGTCGTGACTTGCAGACAATGGTGCATGGCGATGCCTGGTACCTCAGATG 127
|| ||||||||||||||||||||||||||||||| | | | |||||| |||||||||||
Sbjct 61 TCTCTATCCCCGTCGTGACTTGCAGACAATGGTGTACGCCAATGCCTAATACCTCAGATG 120
Query 128 AGCAGTTACAAGCCAACATTGATTTTGGTTGCAGCAACGGCGTCGATTGTACACCGATCC 187
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 AGCAGTTACAAGCCAACATTGATTTTGCTTGCAGCAACGGCGTCGATTGTACACCGATCC 180
Query 188 AACCTGGTGG-AACTTGCTATCA-CCCTAACACGTTATTCGACCATGCGTCGTATGTCAT 245
|||| ||||| || ||| || || |||||| || ||||| |||||||| |||||||||||
Sbjct 181 AACCCGGTGGGAA-TTGTTA-CAACCCTAATACTTTATTTGACCATGCATCGTATGTCAT 238
Query 246 GAACGCTTATTATCAAAGCCATGGGCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGG 305
||||||||||||||| |||||||| ||| |||||||||| ||||||||| ||||| |||
Sbjct 239 GAACGCTTATTATCATAGCCATGGCCGTGTCGAAGATGCGTGTAGGTTCAACCGTAGTGG 298
Query 306 CTGTTTTACTT-TTGCCGATCCAAGTAATGGCTCGTGTATCTACTACACTTAAAGAAAGA 364
|||||| || ||| ||| |||||||| | ||| ||| ||||||| ||||||| |||||
Sbjct 299 TTGTTTTG-TTGTTGTCGACCCAAGTAAAGACTCATGTGTCTACTATACTTAAATAAAGA 357
Query 365 AAACTCTTTG 374
||||||||||
Sbjct 358 AAACTCTTTG 367
> AT5G63225.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr5:25356133-25356740 REVERSE LENGTH=608
Length=608
Score = 326 bits (176), Expect = 1e-88
Identities = 283/333 (85%), Gaps = 14/333 (4%)
Strand=Plus/Plus
Query 33 GCAACTTTTAACACT-TGTTCTTC-TCGTATCAACTGTCGCTATCCCCGTCGTGACTTGC 90
||| |||||||| || | |||||| || |||| |||| || ||||| ||||||||| ||
Sbjct 66 GCAGCTTTTAACGCTCT-TTCTTCTTC-TATCTGCTGTTGCGATCCCTGTCGTGACTAGC 123
Query 91 AGACAATGGTGCATGGCGATGCCTG-GTACCTCA-GATGAGCAGTTACAAGCCAACATTG 148
||||||||||||||||| ||||| | | || || || || || |||||||| || ||||
Sbjct 124 AGACAATGGTGCATGGCCATGCC-GAATGCCACAGGA-GAACAATTACAAGCTAATATTG 181
Query 149 ATTTTGGTTGCAGCAACG-GCGTCGATTGTACACCGATCCAACCTGGTGGAACTTGCTAT 207
||| || ||| ||| | | || |||||||||||||||||||| |||||||||||||||
Sbjct 182 ATTATGCTTGTAGCCA-GAATGTTGATTGTACACCGATCCAACCAGGTGGAACTTGCTAT 240
Query 208 CACCCTAACACGTTATTCGACCATGCGTCGTATGTCATGAACGCTTATTATCAAAGCCAT 267
| |||||||||||||| ||||||||||||| || ||||||||| |||||||||||||||
Sbjct 241 GAACCTAACACGTTATTAGACCATGCGTCGTTTGCCATGAACGCATATTATCAAAGCCAT 300
Query 268 GGGCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGGCTGTTTTACTTTTGC--CGATC 325
|| ||||||||||||||||||||||||||||||||||| |||||| |||| | ||| |
Sbjct 301 GGTCGTATCGAAGATGCTTGTAGGTTCGGCCGTACTGGTTGTTTTG-TTTT-CATCGACC 358
Query 326 CAAGTAATGGCTCGTGTATCTACTACACTTAAA 358
|||||||||| || |||||||||||||||||||
Sbjct 359 CAAGTAATGGTTCATGTATCTACTACACTTAAA 391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17845050895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5