BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952526
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55960.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1829 0.0
> AT5G55960.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:22662576-22665087 FORWARD LENGTH=2422
Length=2422
Score = 1829 bits (990), Expect = 0.0
Identities = 1082/1128 (96%), Gaps = 0/1128 (0%)
Strand=Plus/Plus
Query 700 GGATAATGAAGAGATTGAATACAATTGTTGCTATTGGTTTGATTGTGCTTATGATTGTTG 759
||||||||| |||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 875 GGATAATGACGAGATTGAATACTATAGTTGCTATTGGTTTGATTGTGCTCATGATTGTTG 934
Query 760 GTTCTTTGACTGGTGTCATCTTCTTCTCGTATAAGATCGGTGTTGAAGGGAAAGATGCGG 819
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 935 GATCTTTGACTGGTGTCATCTTCTTCTCGTATAAGATTGGTGTTGAAGGGAAAGATGCTG 994
Query 820 TTTATTCTCTGAAATCTCATGTTGAAGAGAGTAATTACGCTGAGAAGATTGGAATCAAGC 879
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 995 TTTATTCTCTGAAATCTCATGTTGAAGAGAGTAATTACGCTGAGAAGATTGGGATCAAGC 1054
Query 880 AATGGATGGATGAGAATGATGTTCCTGGAATGGTGGATATGTATACGACGAAGTTTTATG 939
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 1055 AATGGATGGATGAGAATGATGTTCCGGGAATGGTTGATATGTATACAACGAAGTTTTATG 1114
Query 940 AAACGGTTTCTGAGCAGATTGATAGTTTGGCAATGCAGTATAATATGACGGAGTTAGTCA 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AAACGGTTTCTGAGCAGATTGATAGTTTGGCAATGCAGTATAATATGACGGAGTTAGTCA 1174
Query 1000 CGGGGATTAAGCATTTCGTGATCGGGCATCCTCAGAACACGTCGACACCATCTACGGCGC 1059
| |||||||||||||| ||||||||||||||||||||||||||||| || || |||||||
Sbjct 1175 CTGGGATTAAGCATTTTGTGATCGGGCATCCTCAGAACACGTCGACGCCTTCCACGGCGC 1234
Query 1060 TTATAACTCCGTCTCCTTATACAGAGAAGCTCATGAGTTTGAGGACTCGGGTTAAGAATC 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 TTATAACTCCGTCTCCTTATACAGAGAAGCTCATGAGTTTGAGGACTCGGGTTAAGAATC 1294
Query 1120 GAGAATGGAGTCAGATCTACTCGGAGGTTGATGTGATTTTCAGGGAACTTATTATCACAA 1179
|||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1295 GAGAGTGGAGTCAGATATACTCGGAGGTTGATGTGATCTTCAGGGAGCTTATTATCACTA 1354
Query 1180 GAGAAGATTTGGTGGAGAAAGCTAAAGGCTTTGCTGTTAAAGGAATGGATGTATCTCAAC 1239
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1355 GAGAAGATTTAGTAGAGAAAGCTAAAGGCTTTGCTGTTAAAGGAATGGATGTATCGCAAC 1414
Query 1240 GGGTTTTCTCAAGCAGCGCATCAGTTGTTGGAGGCGGTGCTAAGTTCGTTTTCTCTATTG 1299
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1415 GGGTTTTCTCGAGCAGCGCATCGGTTGTTGGAGGCGGTGCTAAGTTCGTTTTCTCTATTG 1474
Query 1300 GAAACTTGATAATCTCGGGAGCAGCAGAGTTTTTCAACTTTATCTCTCAGCTAATGGTTT 1359
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1475 GAAACTTGATAATCTCAGGAGCAGCAGAGTTTTTCAACTTTATCTCTCAGCTAATGATTT 1534
Query 1360 TCATTTGGGTTTTATACATTCTAATCACATCAGAATCAGGTGGTGTGACTGAGCAAGTCA 1419
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1535 TCATTTGGGTTTTATACATTCTTATCACATCAGAATCAGGCGGTGTGACTGAGCAAGTCA 1594
Query 1420 TGAACATGCTCCCGATCAACGCAAGTGCTAGAAACAGATGTGTCGAAGTCCTAGACTTAG 1479
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1595 TGAACATGCTCCCGATCAACGCAAGCGCTAGAAACAGATGTGTCGAAGTCTTAGACTTAG 1654
Query 1480 CGATCTCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCTTCTTCCAAGGATGTCTCACTT 1539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 CGATATCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCTTCTTCCAAGGATGTCTCACTT 1714
Query 1540 GGCTATTGTTTAGACTATACAATATACATTTCCTTTACATGTCGACCGTTCTTGCCTTCA 1599
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1715 GGCTATTGTTTAGACTATACAATATACATTTCCTTTACATGTCAACCGTTCTTGCCTTCA 1774
Query 1600 TCAGTGCTCTGTTACCGATTTTCCCTTACTGGTTTGCGACAATCCCAGCGGCTTTGCAAC 1659
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1775 TCAGCGCTCTGTTACCGATTTTCCCTTACTGGTTCGCGACAATCCCAGCGGCTTTGCAGC 1834
Query 1660 TAGTGCTAGAAGGAAGATACATTATTGCAGTTACTCTATCTGTGACTCATCTTGTGCTAA 1719
| ||||||||||||||||| ||| ||||||| | | ||||||||||||||||||||||||
Sbjct 1835 TCGTGCTAGAAGGAAGATATATTGTTGCAGTGATTTTATCTGTGACTCATCTTGTGCTAA 1894
Query 1720 TGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTGGGTCCAATGCTTACATTACTG 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1895 TGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTGGGTCCAATGCTTACCTTACTG 1954
Query 1780 GACTAAGTATTATTGGTGGAGTGACTCTGTTTCCTTCTGCTCTCGAGG 1827
|||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1955 GACTAAGTATTATTGGTGGAGTCACTCTGTTTCCTTCTGCTCTAGAGG 2002
Score = 1118 bits (605), Expect = 0.0
Identities = 668/697 (96%), Gaps = 9/697 (1%)
Strand=Plus/Plus
Query 8 AGAGATTTGATTGATGGAATTGGTCCCGTACGATTCGGAGACGAAATCATCGATCCCCAC 67
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AGAGA-TTGATCGATGGAATTGGTCCCGTACGATTCGGAGACGAAATCATCGATCCCCAC 197
Query 68 AAATCTCGCGTGGCAAGAGATGTTTCGTTCCGCTTCATCGCGTAAACCTCAAGACCCTCC 127
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 198 AAATCTCGCGTGGCAAGAGATGTTTCGTTCCGCTTCATCTCGTAAACCTCAAGACCCTCC 257
Query 128 GTCTTCTTCTTC---ATCGCCACCGCGTAAACCTTCCGGCGATGGATCATCATCCGGCAA 184
|||||||||||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 258 GTCTTCTTCTTCTTCATCGCCACCGCGTAAACCTTCCGGCGATGGATCATCAA--G-CAA 314
Query 185 AACATCTTTATCAACCGCTGATTCACAAGCACGTCTCGCTATGTACATAGCAATGGCTCA 244
||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 315 AACATCTTTATCAACCGTTGATTCCCAAGCCCGTCTCGCTATGTACATAGCAATGGCTCA 374
Query 245 CGCTGGTCTCGTTTTCGCCATTTGTGTTCTGTATTTCGTTGGAAAGCTATTACAAGAGTA 304
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 375 CGCTGGTCTCGCTTTCGCCATTTGTGTTCTGTATTTCGTCGGAAAGCTATTACAAGAGTA 434
Query 305 TCTAAGACCGATTCAATGGGCGATTCTCTGTTCGATTCCGTTACGAGGTATTCAAGAAAC 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 TCTAAGACCGATTCAATGGGCGATTCTCTGTTCGATTCCTTTACGAGGTATTCAAGAAAC 494
Query 365 CCTTGTTGATTTCTGGAGCGAGCCTTTGAAATTAGGGCTAACGGAAGTTGTTCTCGCTGT 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 495 CCTTGTTGATTTCTGGAGCGAGCCTTTGAAATTAGGGCTTACGGAAGTTGTTCTCGCTGT 554
Query 425 TCCTGTTTCTGTCTTCAATGTTTTCATCGGATCCATTGTGGATATTAAAAATC-TCTGCT 483
|||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||
Sbjct 555 TCCTGTTTCTGTCTTCAATGTTTTCATCGGGTCGATTGTGGATATTAAAAA-CGTCTGCT 613
Query 484 TTAGGGTTTTTCTTAGGAGATCGAAACCTAAGAGAACGAGGAAGAAGAACGGTACTGGGT 543
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 614 TTAGGGTTTTTCTTAGGAGATCGAAACCTAAGAGAACGAGGAAGAAGAACGATACTGGGT 673
Query 544 TTTCCAAATTGGTTAGATGGTTAGTCTCTTTTGGTGTCTTTGTCATTGCTTATGAGAGGA 603
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TTTCTAAACTGGTTAAATGGTTAGTCTCTTTTGGTGTCTTTGTCATTGCTTATGAGAGGA 733
Query 604 TTGGGGGAATTGGGTCTCTTGTGATTCTCTCTTTAGGGTTTTTGTTTAGTTCCAAGAATG 663
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 734 TTGGTGGAATTGGGTCTCTTGTCATTCTCTCTTTAGGGTTTTTGTTTAGTTCCAAGAATG 793
Query 664 TCGATTCGTCTCTCTCTGCGGTTTCTTCTCTGAGGAG 700
| |||||||||||||||||||| ||||||||||||||
Sbjct 794 TTGATTCGTCTCTCTCTGCGGTCTCTTCTCTGAGGAG 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92469403890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5