BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952532

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G50320.1 | Symbols: ATHX, ATX, THX | thioredoxin X | chr1:18...   566    7e-161


> AT1G50320.1 | Symbols: ATHX, ATX, THX | thioredoxin X | chr1:18638384-18639536 
REVERSE LENGTH=843
Length=843

 Score =  566 bits (306),  Expect = 7e-161
 Identities = 345/364 (95%), Gaps = 2/364 (1%)
 Strand=Plus/Plus

Query  1    AGAACGTGGAAGAAGAAGCCATGGACTCTATCGTCTCCAGCTCAACGATTCTTATTCGAT  60
            |||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct  53   AGAACGTGGAAGAAGAAGCCATGGACTCTATCGTCTCCAGTTCGACGATTCTTATGCGAT  112

Query  61   CATATCTCACTCCTCCGGTCCGTTCATGTTCTTCGGCAACCTCCGTTTCCGTCAAATCTG  120
            ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || 
Sbjct  113  CATATCTCACTCCTCCGGTTCGTTCATGTTCTCCGGCAACCTCCGTTTCCGTCAAACCTC  172

Query  121  TGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCCTTAAGCTCCG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  173  TGAGCTCAGTCCAGGTCACCTCCGTCGCGGCTAACCGCCACCTGCTTTCGTTAAGCTCCG  232

Query  181  GTGGTAGAGGAAGCAAG-AAATTCTCTAGTTCGGCGATAAGATGCGGCGGAATCAAAGAG  239
            ||| |||| ||| | || |||  ||||||||||| |||||||||||||||||||||||||
Sbjct  233  GTGCTAGAAGAA-CCAGAAAAAGCTCTAGTTCGGTGATAAGATGCGGCGGAATCAAAGAG  291

Query  240  ATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGACCGGCCGGTTTTGGTTGAA  299
            |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct  292  ATTGGAGAGAGTGAGTTTTCGAGTACGGTTCTCGAATCAGCCCAGCCGGTTTTGGTTGAA  351

Query  300  TTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCCGCTATGGAAGCCTTATCT  359
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  352  TTCGTCGCTACTTGGTGCGGTCCCTGCAAATTGATCTATCCAGCTATGGAAGCCTTATCT  411

Query  360  CAGG  363
            ||||
Sbjct  412  CAGG  415



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18448263883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5