BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952534
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39880.1 | Symbols: | Ribosomal protein L23/L15e family pro... 228 3e-59
> AT4G39880.1 | Symbols: | Ribosomal protein L23/L15e family protein
| chr4:18504537-18505338 FORWARD LENGTH=802
Length=802
Score = 228 bits (123), Expect = 3e-59
Identities = 193/225 (86%), Gaps = 11/225 (5%)
Strand=Plus/Plus
Query 36 GAAGA-A-GAAGAGTAAAGTGAAAAGATCTAGCTTTGTTGAGGAAGAAGATGATAACAAG 93
||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 380 GAAGATAGGAAGAGTAAAGTGAAAGGATCTAGCTTTGTTGAGGAAGAAGATGATAAGAAG 439
Query 94 TATCATCATTGGCTTGATCGCAAGGAGAAGAGGGAAATCGGCGGTTATGGTAAAGGTAAA 153
| ||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 440 -A--GTCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGTAAA 496
Query 154 GGTTGTGGTGGTGGTGTAAGAGCTGATTCTTCGACGAGGATTGGTGTTGGGGCAACGGCG 213
||| || | ||||||| ||| ||| | ||| |||||| || | | ||| || |||||
Sbjct 497 GGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGA-GA---G-G-TGGTGCTGCGGCG 550
Query 214 GCGGGAACGACGAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 258
||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 551 GCGGGGACGGCCAAGTTTCCATGGAGCAACATGAGATTTGTTGGT 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13119882489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5