BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952538
Length=1070
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28315.1 | Symbols: | Nucleotide/sugar transporter family p... 1749 0.0
> AT2G28315.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr2:12088877-12090701 FORWARD LENGTH=1179
Length=1179
Score = 1749 bits (947), Expect = 0.0
Identities = 1030/1070 (96%), Gaps = 5/1070 (0%)
Strand=Plus/Plus
Query 1 GGAGAGAGAGGGAGaaaaaaaTGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAG 60
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGAGAGAGGAAG-AAAAAATGGGAGAGATGAAGAGTATGCAAATGGGTGTGATTGGAG 59
Query 61 CATTGTTTCTATCAGTTGCATCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CATTGTTTCTATCAGTTGCATCTTCTGTCTCCATTGTCATTTGCAACAAAGCTTTGATGA 119
Query 121 CCAATCTTGGTTTCCCTTTTGCAACAACACTTACAAGTTGGCATTTGATGGTAACATATT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 CCAATCTTGGTTTCCCTTTTGCAACAACACTTACTAGTTGGCATTTGATGGTAACATATT 179
Query 181 GCACACTTCATGTGGCATATAAACTAAACTTCTTTGAGAATAAACCAATAGACGTGCGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 180 GCACACTTCATGTGGCATATAAACTAAACTTCTTTGAGAATAAACCAATAGACATGAGAA 239
Query 241 CTGTTGTTCTCTTTGGCCTTCTCAATGGCATCTCCATTGGTCTCCTCAATCTCAGCCTCG 300
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 240 CTGTTGTTCTCTTTGGCCTCCTCAATGGCATTTCCATTGGTCTCCTCAATCTCAGCCTCG 299
Query 301 GCTTCAATTCCATCGGCTTCTATCAAATGACCAAACTTGCTATCATACCATTCACTGTTC 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTTTAATTCCATCGGCTTCTATCAAATGACCAAACTTGCTATCATACCATTCACTGTTC 359
Query 361 TTTTAGAAACCCTCTTCTTCAACAAGAAGTTTAGCCAGAAGATAAAGTTCTCTTTATTTT 420
||||||||||||||||| ||||||||||||| |||||||||||||| ||||| || ||||
Sbjct 360 TTTTAGAAACCCTCTTCCTCAACAAGAAGTTCAGCCAGAAGATAAAATTCTCATTGTTTT 419
Query 421 TGCTACTGGTTGGGGTTGGTATAGCATCAATCACAGATCTTCAGCTCAACTTTGTTGGCT 480
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 TGCTGCTAGTTGGGGTTGGTATAGCATCAATCACAGATCTTCAGCTCAATTTTGTTGGCT 479
Query 481 CTGTTCTCTCTCTCCTTGCCATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACAA 540
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 CTGTTCTATCTCTCCTTGCCATTGCCACAACTTGCGTCGGCCAAATTCTAACAAACACTA 539
Query 541 TCCAGAAGAGACTGAACGTGACATCAACACAACTCCTATACCAATCGGCCCCGTTCCAAG 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TCCAGAAGAGACTGAACGTGACATCAACACAACTCCTATACCAATCAGCCCCGTTCCAAG 599
Query 601 CCGCTATACTCTTCGTCTCGGGTCCGTTTGTCGACAAATACCTCACTCGCCTCAATGTTT 660
| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 600 CTGCTATACTCTTCGTCTCGGGTCCTTTTGTCGACAAATACCTCACTAGCCTCAATGTTT 659
Query 661 TCTCCTTCCATTACTCTCCCATCGTCGCGGGGTTCATAACGTTGTCGTGTTTGATAGCGG 720
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TCTCCTTCCATTACTCTCCCATCGTCGTGGGGTTCATAACGTTGTCGTGTTTGATAGCGG 719
Query 721 TTTCGGTTAACTTCAGTACGTTTTTAGTGATTGGAAAGACATCTCCAGTGACATACCAAG 780
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 TTTCGGTTAACTTCAGTACGTTTTTAGTGATTGGAAAGACATCTCCGGTGACATACCAAG 779
Query 781 TCTTGGGACATCTCAAAACGTGTTTGGTGCTCGCATTTGGTTACACTCTCCTCCACGATC 840
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 TCTTGGGACATCTCAAAACGTGTTTGGTGCTCGCATTTGGTTACACTCTCCTTCACGATC 839
Query 841 CTTTCACTCCTCGTAACATCGCAGGAATCCTCATCGCGGTCCTCGGCATGCTTCTCTACT 900
| |||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 840 CCTTCACTCCTCGTAATATCGCAGGAATACTCATCGCTGTCCTCGGGATGCTTCTCTACT 899
Query 901 CCTACTTCTGCTCAGTTGCTTCTAAATCCAAACAAGCCTCCTCCGAGTCTACTTTTCTTG 960
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 900 CCTACTTCTGCTCAGTTGCTTCTAAATCCAAACAAGCCTCCTCCGATTCCACTTTTCTTG 959
Query 961 GGAAAGATAGAGATACGACGCCGCTTTTGGGTCAAGAAAAAGAGAACCATCATGAAGCCA 1020
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 960 GGAAAGATAGAGATACGACGCCGCTTTTGGGACAAGAAAATGAGAACCATCATGAAGCCA 1019
Query 1021 AGAAATTAGACAAGCATTCTCCAGTGTGAA-TAATA---TAACTCTTTCT 1066
||||||||||||||||||||||||| |||| || || |||||||||||
Sbjct 1020 AGAAATTAGACAAGCATTCTCCAGTATGAAATAGTACAATAACTCTTTCT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52409368980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5