BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952541

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | ch...   475    1e-133


> AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | 
chr5:18083419-18093452 REVERSE LENGTH=7295
Length=7295

 Score =  475 bits (257),  Expect = 1e-133
 Identities = 336/373 (90%), Gaps = 9/373 (2%)
 Strand=Plus/Plus

Query  74    CCACAATGCTATAGAAAGCAGCTCTCAAGGCCATCCACAAAAATCCT-CAACTCCTTCTT  132
             |||||||||| |||||||||||||||||||| ||||||||| || || |||||||| |||
Sbjct  6527  CCACAATGCTGTAGAAAGCAGCTCTCAAGGCAATCCACAAACAT-CTGCAACTCCTCCTT  6585

Query  133   TGCCTCCACTGTCTCTGGCGGGAGAAACTTCAGGGTCTTCTCAACCCAATTTACCTCCTC  192
             ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  6586  TGCCTCCACCGTCTCTGGCGGGTGAAACTTCAGGGTCTTCTCAACCCAAATTACCTCCTC  6645

Query  193   ACAACCTAAACAGCACAGAACCACTGTCCTCGGCGGAAGCAATCAGATTTCCACCACCTG  252
             |||||||||| |||||||||||||||||||   | |||||||||| | ||||||||||||
Sbjct  6646  ACAACCTAAATAGCACAGAACCACTGTCCT---CTGAAGCAATCATAATTCCACCACCTG  6702

Query  253   AAGAAGAATATGTGATAGCAGCAGCACCATCTGAAGCA-CATGGGCCTAGTCTAGAGGGA  311
             ||||||| | ||||||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct  6703  AAGAAGATTCTGTGATAGCAGCAGCGCCATCTGAAGCACCA-GGGCCTAGTCTAGAGGGA  6761

Query  312   ATCACTGGTACGACAAAGTCTATCTCGCTAGATAGCAAAAGCTCTGAACCA-AAATCTAC  370
             ||||||||||| |||||||| ||||||||||| ||| |||||||||||||| ||| ||| 
Sbjct  6762  ATCACTGGTACAACAAAGTCAATCTCGCTAGAGAGCCAAAGCTCTGAACCAGAAA-CTAT  6820

Query  371   CAACCAAGATGGAGACTTAGATCCAGAAGCTGATGATAAAATTGAGTCTGTTCGAATCCC  430
              || |||||||||||||||||||||||| ||||||| ||| |||||||||  |||| |||
Sbjct  6821  TAATCAAGATGGAGACTTAGATCCAGAAACTGATGAGAAAGTTGAGTCTGAACGAACCCC  6880

Query  431   GCTTCATTGAGAT  443
             |||||||| ||||
Sbjct  6881  GCTTCATTCAGAT  6893



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5