BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952542
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | ch... 292 9e-79
> AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083419-18093452 REVERSE LENGTH=7295
Length=7295
Score = 292 bits (158), Expect = 9e-79
Identities = 245/284 (86%), Gaps = 17/284 (6%)
Strand=Plus/Plus
Query 27 AGAAGCTTCCCAAGGAGGAACGTCGTGCATTACATGCCACAAATAAATCTTCTAGTTATT 86
||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| ||
Sbjct 1459 AGAAGCTTCCCAAGGAGGAACGTCGTGCAGTACGTGCCACTAATAAATCTTCTAGTTGTT 1518
Query 87 TGGATGATA-AAAGCTCTCTTCCGGCTGGAAACCTCCAGGTTGATCGTGTTTTAGTATGC 145
|||| |||| ||| ||||||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 1519 TGGAAGATACAAA-CTCTCTTCCGGTTGGAAACCTCCAGGTTCATCGTGTTTTAGGATGC 1577
Query 146 CCAATCCAAGGTCTGACTAAAACCTCGCTTTGTAGTGCTCTTTCCGATGTCTTGTGTTCT 205
| ||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 1578 CGAATCCAAGGTCTGACTAAAACCTCGCTGTGTAGTGCTCTTTCAGATGACTTGTGTTCG 1637
Query 206 GATAATTTACAAGCTAATGACCAGCG---T-G---A-TACAA-AT--G----CTGAATCA 250
|||||||||||||||| |||||| || | | | ||||| || | |||||| |
Sbjct 1638 GATAATTTACAAGCTACTGACCAACGGGATAGCTTAGTACAAGATACGAATGCTGAATTA 1697
Query 251 GTAGTTGCTGAGGGCAGAACATAATCTTCTTCTAAGACGGGTAA 294
||||||||||||| ||||| | | ||||||||| |||| |||||
Sbjct 1698 GTAGTTGCTGAGGACAGAATAGATTCTTCTTCTGAGACAGGTAA 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13572292230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5