BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952546
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT2G35250.1 | Symbols: | Protein of Unknown Function (DUF239) ... 701 0.0
> AT2G35250.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:14846662-14848662 REVERSE LENGTH=1029
Length=1029
Score = 701 bits (379), Expect = 0.0
Identities = 473/518 (91%), Gaps = 7/518 (1%)
Strand=Plus/Plus
Query 21 ATGGCATTACATCTAGCGTTAGGTCTATGTGTATATCTGCTGTTTACACAAGGTGCACAG 80
|||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCATTACGTCTAGCTTTAAGTCTATGTGTTTATCTGCTGTTTACACAAGGTGCACAG 60
Query 81 GGAAACATTGATGATTTTGATTGTGTTGAGATATACAAACAACCGGCTTTCAAACATCCA 140
||||||| |||||||||||||||||| || |||||||||||||| |||||| ||||||||
Sbjct 61 GGAAACACTGATGATTTTGATTGTGTGGAAATATACAAACAACCAGCTTTCCAACATCCA 120
Query 141 TTGTTAAAAAATCACAAGATTCAGGAAACATTCAGCCTAGATGGAAATATTGAAAGAAGC 200
||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTGTTGAAAGATCACAAGATCCAGGAAACATTCAGCCTAGATGGAAAAATTGAAAGAAGC 180
Query 201 AACAAATATAAAACCAAAGAGCATTGTCCAAAAGGAACAGTTCCAATTTTAAGACAAGGA 260
||||||||||| || ||||||||||||||||||||||| ||| ||||||| |||||| ||
Sbjct 181 AACAAATATAATACAAAAGAGCATTGTCCAAAAGGAACCGTTGCAATTTTGAGACAAAGA 240
Query 261 AATGAATCTCAA-AGCGTTCATCTGAATACAGCCGAGTATTCTGGTCAACATTTTGCAAC 319
|||| ||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 241 AATGTATC-CAAGGGCGTTCATTTGAATACCGCCGAGTATTCTGGTCAACATTTTGCAAC 299
Query 320 AATTGAGACTACGTTAGATGGAAGTATCTATCGGGGAACTGAAGCTGAAATAAGTGTTCA 379
||||||||| | |||||||||||||| ||||||||| | |||||||| |||||| ||||
Sbjct 300 AATTGAGACCATTTTAGATGGAAGTATATATCGGGGAGCAGAAGCTGATATAAGTATTCA 359
Query 380 TGATCTT-AAATTGCAAAATAATCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGAC 438
|||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 TGAT-TTGAAACTGCAAAATAACCAATACAGTAAAAGTCAAATATGGTTAGAGAATGGAC 418
Query 439 CTCGAGCTCAACTCAATAGTATACAAGCTGGTTGGGCAGTACATCCAAGATTATACGGTG 498
||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 419 CTCCAGGTCAACTCAATAGTATACAAGCTGGTTTGGCAGTACATCCAAGATTGTACGGTG 478
Query 499 ATAGTGTCACGA-GATTTACAATCTATTGGACTGTGAG 535
|||||||||| | |||||||||| |||||||||| |||
Sbjct 479 ATAGTGTCAC-ACGATTTACAATATATTGGACTG-GAG 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5