BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952549

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G36925.1 | Symbols:  | unknown protein; Has 69 Blast hits to...   228    2e-59


> AT1G36925.1 | Symbols:  | unknown protein; Has 69 Blast hits 
to 69 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa 
- 45; Fungi - 4; Plants - 8; Viruses - 0; Other Eukaryotes 
- 10 (source: NCBI BLink). | chr1:13986436-13987289 FORWARD 
LENGTH=525
Length=525

 Score =  228 bits (123),  Expect = 2e-59
 Identities = 151/163 (93%), Gaps = 7/163 (4%)
 Strand=Plus/Plus

Query  1    AAG-AAAGAAGGGTGGAGAGGATGGCTATTCGTTCCAAGAAGAAAAACAATCAAACATAA  59
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  19   AAGAAAAGAAGGGTGGAGAGGATGGCTATTCGTTCCAAGAAGAAAAACAATCAAACAGAA  78

Query  60   AATCAGGA-AAACA-----TTCCTCCTAATTCTGAAGCTAACCCCATATCACCAATGCAA  113
            |||||||| ||| |     ||||||||| ||||||||||||| |||||||||||||||||
Sbjct  79   AATCAGGATAAAGAAAACGTTCCTCCTAGTTCTGAAGCTAACTCCATATCACCAATGCAA  138

Query  114  CCAAACAGAGTTTCACCTAATAGCTTGAGTGATATTACAAATG  156
            ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  139  CCAAAGAGAGTTTCACCTAATAGCTTGAGTGATATTACAAATG  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8551229670


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5