BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952551

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25265.1 | Symbols: LCR4 | low-molecular-weight cysteine-ric...   285    1e-76


> AT3G25265.1 | Symbols: LCR4 | low-molecular-weight cysteine-rich 
4 | chr3:9202880-9203623 REVERSE LENGTH=246
Length=246

 Score =  285 bits (154),  Expect = 1e-76
 Identities = 176/187 (94%), Gaps = 0/187 (0%)
 Strand=Plus/Plus

Query  65   AGGTGTGGTTGGAAATGTGGAGCAAAAAAGCCAAGATTGGTGTTGGAGCGTTGTAAACAA  124
            ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  60   AGGAGTGGTTGGAAATGTGGAGCAAAAAAGCCAAGATTGGTGTTGGAGCATTGTAAACAA  119

Query  125  AGACCGTTGTCTTCAGAAAGAGTGTGAATCTCTGTGTTTGaaaaaaaaTCCAAAAGGAAA  184
            ||||||||||||||||||||||||||| |||||||||| ||| ||| |||| ||||||||
Sbjct  120  AGACCGTTGTCTTCAGAAAGAGTGTGAGTCTCTGTGTTCGAAGAAACATCCGAAAGGAAA  179

Query  185  ATTTATTTGCGCACCTTCAACCCCGGGAGGACCTTTTCAATGTCAATGTCGTCATCCTTG  244
            |||||| |||  ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  180  ATTTATGTGCATACCTTCAACCCCGGGAGGACCTTTTCAATGTCACTGTCGTCATCCTTG  239

Query  245  CCGTTAA  251
            |||||||
Sbjct  240  CCGTTAA  246



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5