BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952554

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20270.1 | Symbols:  | lipid-binding serum glycoprotein fami...   632    0.0  


> AT3G20270.1 | Symbols:  | lipid-binding serum glycoprotein family 
protein | chr3:7067059-7070946 FORWARD LENGTH=2314
Length=2314

 Score =  632 bits (342),  Expect = 0.0
 Identities = 444/490 (91%), Gaps = 20/490 (4%)
 Strand=Plus/Plus

Query  20   TGGATTGGACCAATCCGTCAAGGATTAAGCAAACGCTGCAGGAGATATGTGGCTTTATAC  79
            |||||||||||||| ||||||||||||||||||     | ||||||||||||||||||||
Sbjct  291  TGGATTGGACCAATTCGTCAAGGATTAAGCAAA-----C-GGAGATATGTGGCTTTATAC  344

Query  80   ATCAGCAGAAACATATTAGCTGT-G--GATACAGACATAGATGAGATGCTTGGACATATT  136
            ||||||||||||||||||| ||| |  |||||||||||||||||||||||||||||||||
Sbjct  345  ATCAGCAGAAACATATTAGGTGTGGATGATACAGACATAGATGAGATGCTTGGACATATT  404

Query  137  TACTTGTTTTTGAAAGATCAGCTTCAACTTTCCACTATGCCTGCTTCAGGCATTTTGCAT  196
            ||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  405  TACGTGTTCTTGAATGATCAGCTTCAACTTTCCACTATGCCTGCTTCAGGCATTTTGCAT  464

Query  197  GGAACCCTGATCGGTAAGCTAGACCAACTGAGTGTTTGTGGCAAATCGAAAGAAGAAGCT  256
            |||||||   |   | |  | |||||| ||| |||||||||| |||||||||||||||||
Sbjct  465  GGAACCC---T---T-A--TCGACCAATTGATTGTTTGTGGCCAATCGAAAGAAGAAGCT  515

Query  257  GATGAGCTTGCTACAAAGATCTGGCTGGCTCTTCTCGACAATTTAGAGGACACTAAACAT  316
            | ||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct  516  GGTGAGCTTGCAACAAAGATTTGGCTGGCTCTTCTTGACAATTTAGAGGACACAAAACAT  575

Query  317  AC-TTTCATCGTGCTGAAATCAATCGCACAAGAATATGATGGCTTTCTTCCATATCCATA  375
            || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576  ACATTT-ACCGTGCTGAAATCAATCGCACAAGAATATGATGGCTTTCTTCCATATCCATA  634

Query  376  TTCAAGACCGATCAAAATCCAGTGGAAGGTGTTTGAGAAACTGTTTGTGGATTTCCGCGA  435
            ||||||||| |||||| | |||||||||||||| |||||||||||||| |||||||| ||
Sbjct  635  TTCAAGACCAATCAAAGTGCAGTGGAAGGTGTTCGAGAAACTGTTTGTAGATTTCCGTGA  694

Query  436  CTTGCTTGATCATTCAGAGTATTGCGACCTAATAGGAATTGCCAAGAAGAAGTTTCAAAC  495
            ||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||
Sbjct  695  CTTGCTTGATCATTCAGAGTACTGCGACTTAATAGGAATTGCCAAAAATAAGTTTCAAAC  754

Query  496  AATACCTTAT  505
             |||||||||
Sbjct  755  CATACCTTAT  764



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26071522293


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5