BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952555
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20270.1 | Symbols: | lipid-binding serum glycoprotein fami... 1338 0.0
> AT3G20270.1 | Symbols: | lipid-binding serum glycoprotein family
protein | chr3:7067059-7070946 FORWARD LENGTH=2314
Length=2314
Score = 1338 bits (724), Expect = 0.0
Identities = 849/907 (94%), Gaps = 18/907 (2%)
Strand=Plus/Plus
Query 6 TTCTTCTTCTTGGAAATGGGTCTCATGAAAGTAATGACGATTCTGGTTCTCTTCGTCTCG 65
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TTCTTCTTCTTGGAAATGGCTCTCATGAAAGTAATGACGATTCTGGTTCTCTTCGTCTCG 845
Query 66 GTGTCATCGACCTTGGCGCAATCCAACAATGGCGGTCACATTTCGATACTCGTCTCGGAA 125
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 846 GTGTCATCGACCTTGGCGCAATCCAACAATGGCGGTCACATTTCGATAATCGTCTCGGAA 905
Query 126 ATGGGTCTTGACTTTGCGAAAGATTACCTTATCAAGAAAGTGATCACTGTGACGCTTCCG 185
| |||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||
Sbjct 906 ACAGGTCTTGAATTTGCTAAAGATTACCTCATCAAGAAAGTGATCACTACGACGCTTCCA 965
Query 186 CTTCAGCTACCAGACATTGAGAATAAGGTTAAGATCCCTTTAATCGGGAAAGTTCGAATG 245
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 966 CTTCAGCTACCAGACATTGAGAATAAGGTTAAGATCCCTCTAATCGGGAAAGTTCGAATG 1025
Query 246 GGTCTATCGAATATTCAGATTGATGCAGTTCATGTCCAGTCTTCGAAGATCGAGACGAGA 305
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1026 GGTCTATCGAATATTCAGATTGATGCAGTTCATGTCCAGTCTTCGAAGATGGAGACTCGA 1085
Query 306 AAAGATGGAATTGTTTTGAGTGTTTTAGGTGCTACAGCAAATTTGAGCATGGACTGGTCT 365
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1086 AAAGATGGAATCATTTTGAGTGTTTTAGGTGCTACAGCAAATTTGAGTATGGACTGGTCT 1145
Query 366 TATACTTATAGAGCTTCCTTCTTTGAGATTTCTGATCATGGAGATGCTTCTGTCGAGGTT 425
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1146 TATACTTACAGAGCTTCCTTCTTTGAGATTTCTGATCATGGAGATGCTTCTGTTGAGGTT 1205
Query 426 AAAGGAATGGATTTGAAAATCACTGCCACTTTGGTTAATGATAATGGAAGTCTAAAGATT 485
||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 AAAGGAATGAATGTGAGAATCACTGCCACTTTGGTTAATGATAATGGAAGTCTAAAGATT 1265
Query 486 GTATCACGAGAAAATGATTGTACAGTGGAA-AATATTGATATTCATATCAATGGTGGTGC 544
| ||||| ||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1266 GCCTCACGGGAAAATGATTGTACAGTA-AAGAACATTGATATTCATATCAATGGTGGTGC 1324
Query 545 TTCTTGG---------G---TGGTTGATGCATTTCAAAAGATGATTATATCTACTGTTGA 592
||||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1325 TTCTTGGCTATATCAAGGGGTGGTTGATGCATTTCAAAAAATGATTATATCTACTGTTGA 1384
Query 593 AAAGACTGTCTCTACTAAAATTGTAGAAAATATGAAGAAGCTCGATTCTTTCTTGCAATC 652
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1385 AAAAACTGTCTCTACTAAAATTGTAGAAAAAATGAAGAAGCTTGATTCTTTCTTGCAATC 1444
Query 653 ACTTCCAAAACAGAGAAAGATTGATGACTCTGCTGCAGTGAATCTCACTTTTACAGGCAA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ACTTCCAAAACAGAGAAAGATTGATGACTCTGCTGCAGTGAATCTCACTTTTACAGGCAA 1504
Query 713 CCCTGTATTAGGGAATTCGTCGGTTGAAGTTGACATTAATGGTTTATTCTTGCCAAAGGG 772
|||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1505 CCCTGTCTTAGGGAATTCGTCGGTTGAAGTTGACATCAATGGTTTATTCATGCCAAAGGG 1564
Query 773 TGATGATGTTAAAGTTTCAGGATCTCGTTCTTCTTCCGTCTTTGGTGGGGT-AA-A-GAG 829
||||||| |||||||| |||| ||||||||||||||| ||||||||||||| || | |||
Sbjct 1565 TGATGATATTAAAGTTGCAGGGTCTCGTTCTTCTTCCTTCTTTGGTGGGGTTAATAAGAG 1624
Query 830 AATGGTGACAATTTCAGTAGAAGAAGAAGTTTTCAACTCTGCAACACTTGTCTACTTCAA 889
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1625 AATGGTGACAATTTCAGTAGAAGAAGGAGTTTTCAACTCTGCAACACTTGTCTACTTCAA 1684
Query 890 TG-TAAG 895
| ||||
Sbjct 1685 CGCTAAG 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5