BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952566
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05700.1 | Symbols: | Drought-responsive family protein | c... 887 0.0
> AT3G05700.1 | Symbols: | Drought-responsive family protein |
chr3:1682088-1684572 REVERSE LENGTH=1265
Length=1265
Score = 887 bits (480), Expect = 0.0
Identities = 637/707 (90%), Gaps = 33/707 (5%)
Strand=Plus/Plus
Query 9 GTTTTGTCAATAATGGATTCTGATTCATGGAGTGATCGTCTTGCTTCAGCTACAAGGAGA 68
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 238 GTTTTGTCAATAATGGATTCCGATTCATGGAGTGATCGTCTCGCTTCAGCTACGAGGAGA 297
Query 69 TACCAGCTAGCTTTTCCATCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGG 128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TACCAGCTAGCTTTTCCATCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGA 357
Query 129 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATAGTGTG 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATATTGTC 417
Query 189 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAGACCGGGGTATGTCCA 248
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 418 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCA 477
Query 249 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAACA---TAG- 304
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 478 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAGCACGCTAAT 537
Query 305 A-----AA-AT-CA----A-GA-A-------GA-G-G-CGGGTCACATTCCACGTTATCG 341
| || || || | || | || | | ||||||| ||||||| ||||||
Sbjct 538 ATTTTCAAGATGCACCGCAAGAGAAAACCAAGAAGAGGCGGGTCATATTCCACATTATCG 597
Query 342 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTATTTGGAGGATCTTCGTGT 401
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTCTTTGGAGGATCTTCGTGT 657
Query 402 ATAGTATCTTCTTCCTCATCATCCAATGTAGCGGCTGACCCATTGTTATCGTCGTTCATT 461
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 ATAGTATCGTCTTCCTCATCATCCAATGTAGCTGCTGACCCATTGTTATCGTCGTTCATT 717
Query 462 TCACCTATTGCTGAAGGGTTCTTCACAACGGAGTCATGTATATCTGCAGAAACCGGTTCT 521
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||
Sbjct 718 TCTCCTATTGCTGATGGGTTCTTCACCACGGAGTCATGCATATCTGCAGAAACGGGTCCT 777
Query 522 GTCAAGAAACCAT-TAACTCAGAGTATACCTGAAGGGAATGC-AAAAATACCGTCTCTTT 579
||||||||| || || |||| || |||| ||| |||||| ||||| || |||||||
Sbjct 778 GTCAAGAAAACAACTAT-TCAGTGTTTACCCGAACAGAATGCGAAAAAAACT-TCTCTTT 835
Query 580 CAGCTGAGGATCATAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTGTTGAGCT 639
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 CAGCTGAGGATCACAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTATTGAGCT 895
Query 640 CTACGATTCTTGATGACGGCTTATAATGGAGTAAAATGCTTCTGGTA 686
||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 896 CTACGATTCTTGATGACAGCTTATAATGGAGTATC--GCTTCTGGTA 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33204771167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5