BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952576
Length=226
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77750.1 | Symbols: | Ribosomal protein S13/S18 family | ch... 364 1e-100
> AT1G77750.1 | Symbols: | Ribosomal protein S13/S18 family |
chr1:29230154-29231524 REVERSE LENGTH=691
Length=691
Score = 364 bits (197), Expect = 1e-100
Identities = 218/228 (96%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 1 GAAGAAGTTGGCCAGCACCAGCATGGTGATGAA-T-TGGAGGCGTGTTGGATCGGAAATA 58
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 293 GAAGAAGTTGGCCAGCACCAGCATGGTGATGAACTGAGGAGGCGTGTTGGATCGGAAATA 352
Query 59 CAGAGACTGGTCGAAGTAGACTGCTACAGAGGTAGTAGACATAGACATGGAATGCCTTGC 118
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 353 CAGAGACTGGTCGAAGTAGATTGCTACAGAGGTAGTAGACATAGACATGGATTGCCTTGC 412
Query 119 AGAGGACAAAGAACCAAAACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCA 178
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 AGAGGACAAAGAACCAGTACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCA 472
Query 179 GGAAAGAAGAAAGCTCCTCGCAAGTAAACCTGTCTTTCAATCCATTCT 226
|||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 473 GGAAAGAAGAAAGCCCCTCGCAAGTAAACCTGTCTTTCTATCTATTCT 520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10154085298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5