BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952578
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein ki... 638 0.0
> AT5G65600.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:26216126-26218153 REVERSE LENGTH=2028
Length=2028
Score = 638 bits (345), Expect = 0.0
Identities = 404/433 (93%), Gaps = 2/433 (0%)
Strand=Plus/Plus
Query 276 GCAGCGAAAGAAAGAG-TTTTAAATGAAGTTAAGATCATCAGCAAACTGAGACATCGAAA 334
|||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1158 GCAGGGAAAGAACGAGTTTTTAAACGAAGTTAAGATCATCAGCAAACTGAGACATCGAAA 1217
Query 335 CATGGTGCAACTCATTGGTTGGTGTAATGaaaaaaaCGAGTTCTTGCTGATATATGAGTT 394
| | ||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1218 CCTCGTGCAGCTCATCGGTTGGTGTAATGAGAAAAATGAGTTCTTGCTGATATATGAGTT 1277
Query 395 AGTGCAAAATGGTAGCTTGAACTCCCAACTCTTTGGCAAAAGACCCCATTTACTTTCTTG 454
||| | |||||||||||||||||| || |||||||| ||||||||| |||||||||||||
Sbjct 1278 AGTTCCAAATGGTAGCTTGAACTCTCACCTCTTTGGGAAAAGACCCAATTTACTTTCTTG 1337
Query 455 GGACATAAGGTACAAGATAGCTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCATGAAGA 514
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGACATAAGGTACAAGATAGGTCTTGGTTTAGCCTCTGCTCTGCTTTATCTTCATGAAGA 1397
Query 515 ATGGGATCAATGTGTACTGCACAGAGACATCAAAGCAAGCAATATAATGCTTGACAGTGA 574
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1398 ATGGGATCAATGTGTACTGCACAGAGACATCAAGGCAAGTAATATAATGCTTGACAGTGA 1457
Query 575 TTTCAATGTAAAGTTAGGTGATTTCGGTTTGGCTCGGGTTATGAACCATGAACATGGTTC 634
|||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||
Sbjct 1458 ATTCAATGTAAAGTTAGGTGATTTCGGGTTGGCTCGGCTAATGAACCATGAACTTGGTTC 1517
Query 635 CCATACAACAGGATTGGCTGGAACTTTTGGGT-CATGGCACATGAATATGTAACGAAAGG 693
||||||||| || ||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1518 CCATACAACGGGGTTGGCTGGAACTTTTGGGTACATGGCACCTGAATATGTAATGAAAGG 1577
Query 694 AAGTGCGAGTAAA 706
|||||||||||||
Sbjct 1578 AAGTGCGAGTAAA 1590
Score = 353 bits (191), Expect = 1e-96
Identities = 255/285 (89%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 9 CCATCAGAAGTAATGTTTGGGTTTATAGCTGCTGCTGGAACAAACACAGAGGAACATAGA 68
|||||||| || ||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 730 CCATCAGATGTTATGTTCGGGTTTATAGCTGCCGCTGGGACAAACACAGAGGAACATAGA 789
Query 69 CTTTTATCATGGGAGCTCAGTTCAACTTTGGATATCGAGAAAGCCGATAGCAAGATAGGA 128
||||||||||||||||||||||||| |||||| | ||| ||||||||||||| |||||||
Sbjct 790 CTTTTATCATGGGAGCTCAGTTCAAGTTTGGACAGCGACAAAGCCGATAGCAGGATAGGA 849
Query 129 TTGGTAGTTGGCATTTCGGTTTCCGGGTTTGTTTTACTGATAGTTT-TGGTCCA-CACGA 186
| ||| |||||||||||| ||||||||||||||| |||| |||| ||||| | ||| |
Sbjct 850 CTAGTAATTGGCATTTCGGCTTCCGGGTTTGTTTTTCTGAC-GTTTATGGTC-ATCACAA 907
Query 187 TCGTGGTGGTTTGGTCACGGAAGCAAAGAAAAAAGAAAGACAGAGATATAGCAAACATGA 246
|||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 908 CCGTGGTGGTTTGGTCACGGAAGCAAAGAAAGAAGAAAGAAAGAGATATAGAAAACATGA 967
Query 247 TATCGATAAACGAAGATCTTGAAAGGGAAGCAGCGA--AAGAAAG 289
||||||||||| |||| |||||||||||||||| || |||||||
Sbjct 968 TATCGATAAACAAAGACCTTGAAAGGGAAGCAG-GACCAAGAAAG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5